Supplementary Data for the paper "The distribution of fitness effects of new mutations in regulatory regions of D. melanogaster"
Authors/Creators
-
1.
University of North Carolina at Chapel Hill
- 2. University of North Carolina
Description
This repository contains the data and code associated with the manuscript:
Repository contents
1. BED files specifying genomic coordinates (nonoverlapping_annotations.zip) for the annotation classes used in inference:
- exonic regions
- phastCons conserved noncoding regions
- low-confidence regulatory regions
- high-confidence regulatory regions
- putatively neutral intergenic regions
2. The final filtered VCF (vcf_for_dfereg_simulansfilter.noRepeats.vcf.gz) used for empirical analyses of the three study populations, together with the final accession list (sample_lists.csv).
3. All code required to reproduce the simulations (simulations.zip) reported in the manuscript, including the mutation and recombination rate maps, along with the simulation outputs analyzed in the manuscript.
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Contact
For questions about these data and scripts, please contact:
Austin Daigle
University of North Carolina at Chapel Hill
adaigle@unc.edu