gustaveroussy/sopa: v2.2.0

Published February 24, 2026 | Version v2.2.0

Software Open

[2.2.0] - 2026-02-24

This release unpins zarr, allowing for upgrading to the newer SpatialData version.

Everything should be backward compatible, except for some updates in the sopa.io.wsi reader (more details below).

Fixed 'No module named "pkg_resources"' (#387) due to installing newer SpatialData version.

Python 3.14 should now be supported. More tests will be performed to ensure stability.
Faster import sopa (more lazy loaded packages).
Add spatial plot colored by cell annotation in the Sopa report (if any cell type or leiden)

Drop support for python==3.10. Sopa now depends on python>=3.11.
sopa.io.wsi now uses openslide as a default backend, and uses wsi as a default image name (see all function arguments in the docs).
Removed deprecated sopa.io.wsi_autoscale

Name	Size	Download all
gustaveroussy/sopa-v2.2.0.zip md5:6af137dc1e4347326daa7d1f4060e541	16.1 MB	Preview Download

Is supplement to: Software: https://github.com/gustaveroussy/sopa/tree/v2.2.0 (URL)