dholab/nvd: Release v2.5.2

What's Changed

• Merge pull request #20 from dholab/v2.5.2-rc (f194427)
• chore: update the fingerprint "again" and also revert ludicrous disk to 450GB (f02ac1b)
• fix params block bug (aeb6d91)
• chore: update config defaults and regenerate fingerprint (e2fcc61)
• feat: replace STAT host scrubbing with deacon in clumpify workflow (48188ad)
• fix: gate REPAIR_PAIRS behind repair_pairs param (f009f1b)
• doc update: update reference data links to new v2.5 versions (25bee34)

Contributors

Thanks to: William Gardner,wkgardner

Version Information

• Version: 2.5.2
• Tag: v2.5.2
• Commit: f1944273d17a44062c62f4b065b21a93f19499d4

Installation

Using this release with Nextflow:

nextflow run dhoconno/nvd -r v2.5.2 \
    --tools all \
    --samplesheet your_samples.csv \
    --experiment_id your_experiment_id \
    [other parameters...]

Development setup:

git clone --branch v2.5.2 https://github.com/dhoconno/nvd.git
cd nvd
pixi install --frozen
pixi shell

Documentation

• Example Commands
• Contributor Guide
• Main README