Transcriptional atlas of kidney organoid development

This repository contains curated AnnData objects for the kidney organoid atlas generated in the Melissa Little Kidney Research Group (MCRI and UCPH).

These objects can be opened in a cellxgene instance for instant visualisation and investigation.

Wilson_kidney_organoid_atlas.h5ad; The entire dataset, all cells at all time points

Wilson_KidneyOrganoid_Stage1_atlas.h5ad; The cells in Stage1, containing iPSC, day 3, day 4 and day 5 time-points

Wilson_KidneyOrganoid_Stage2_atlas.h5ad; The cells in Stage2, all day 7, day 8 and day 9 time-points

Wilson_KidneyOrganoid_Stage3_atlas.h5ad; The cells in Stage3, all day 12, day 13 and day 14 time-points

Wilson_KidneyOrganoid_Stage4_atlas.h5ad; The cells in Stage4, all day 27 time-points, the final collection point and the most mature organoids.