PoisotLab/SpeciesDistributionToolkit.jl: SimpleSDMLayers-v0.9.5

SimpleSDMLayers SimpleSDMLayers-v0.9.5

This release has been identified as a backport. Automated changelogs for backports tend to be wildly incorrect. Therefore, the list of issues and pull requests is hidden.

<!-- **Merged pull requests:** - CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat) (#3) (@github-actions[bot]) - Fix the issue with NODATA using the wrong encoding (#15) (@tpoisot) - Replace collect by values (#18) (@tpoisot) - Fix SimpleSDMLayers tests (#19) (@tpoisot) - CompatHelper: add new compat entry for ArchGDAL at version 0.9, (keep existing compat) (#22) (@github-actions[bot]) - Convert to WGS84 using GDAL_WARP if needed (#34) (@tpoisot) - CompatHelper: add new compat entry for GDAL at version 1, (keep existing compat) (#41) (@github-actions[bot]) - Allow additional drivers to the geotiff writer (#47) (@tpoisot) - [GBIF] add option to look for vector of taxa (#57) (@tpoisot) - Update the vignette on stats (#58) (@tpoisot) - Move the pseudo-absences to the top package and add additional methods (#59) (@tpoisot) - CompatHelper: add new compat entry for Distances at version 0.10, (keep existing compat) (#67) (@github-actions[bot]) - CompatHelper: add new compat entry for StatsBase at version 0.33, (keep existing compat) (#69) (@github-actions[bot]) - Add additional metadata to the providers (#72) (@tpoisot) - Add a Tables.jl interface for layers (#82) (@tpoisot) - CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#85) (@github-actions[bot]) - Aggregate code coverage analysis (#87) (@tpoisot) - Work on the dataset cards (#88) (@tpoisot) - Add some tests to SimpleSDMLayers (#89) (@tpoisot) - Merge git tags (#92) (@tpoisot) - [GBIF] Tables.jl (#96) (@tpoisot) - [SimpleSDMLayers] cell size (#98) (@tpoisot) - 📝 README (#100) (@tpoisot) - CompatHelper: add new compat entry for GBIF at version 0.4, (keep existing compat) (#102) (@github-actions[bot]) - Make all layers broadcastable (#103) (@tpoisot) - 🗺️ Update plotting code to work with Makie as a default (#105) (@tpoisot) - CompatHelper: add new compat entry for SimpleSDMDatasets at version 0.1, (keep existing compat) (#108) (@github-actions[bot]) - CompatHelper: bump compat for HTTP to 1 for package GBIF, (keep existing compat) (#109) (@github-actions[bot]) - CompatHelper: add new compat entry for GBIF at version 0.4 for package Fauxcurrences, (keep existing compat) (#112) (@github-actions[bot]) - CompatHelper: bump compat for ArchGDAL to 0.10, (keep existing compat) (#114) (@github-actions[bot]) - CompatHelper: add new compat entry for MakieCore at version 0.6, (keep existing compat) (#132) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9, (keep existing compat) (#133) (@github-actions[bot]) - CompatHelper: add new compat entry for SimpleSDMLayers at version 0.9 for package Fauxcurrences, (keep existing compat) (#135) (@github-actions[bot]) - Bring Fauxcurrences back in the main package (#137) (@tpoisot) - CompatHelper: add new compat entry for Fauxcurrences at version 0.1, (keep existing compat) (#141) (@github-actions[bot]) - Fix clipping with exact coordinates (#144) (@gabrieldansereau) - 🐛 correct check on layer inner type (#146) (@tpoisot) - ✨ Split a layer into tiles (#148) (@tpoisot) - Test for clipping with natural coordinates (#152) (@gabrieldansereau) - 🩹 SimpleSDMLayers handling of clip with coordinates on cell boundaries (#153) (@tpoisot) - 🐛 Update the stitching code to get the right bounding box (#155) (@tpoisot) - GBIF throws 404 (not 410) for deleted resources (#156) (@tpoisot) - ✅ add edge case test for clip in SpeciesDistributionToolkit (#159) (@gabrieldansereau) - compression/format kwargs for geotiffs (#161) (@gottacatchenall) - fix typos (#162) (@spaette) - Update the documentation (#163) (@tpoisot) - Fix the GBIF issue for single argument queries (#166) (@tpoisot) - Fix the naming issue when imported from a submodule (#167) (@tpoisot) - Phylopic wrapper (#169) (@tpoisot) - Read the GBIF enums from the API endpoints (#170) (@tpoisot) - compat(phylopic): add compat entries (#176) (@tpoisot) - Update the contributing guidelines (#177) (@tpoisot) - Add GBIF/Phylopic integration (#179) (@tpoisot) - Build website for tagged version (#180) (@tpoisot) - CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#183) (@github-actions[bot]) - CompatHelper: bump compat for StatsBase to 0.34 for package Fauxcurrences, (keep existing compat) (#184) (@github-actions[bot]) - CompatHelper: bump compat for StatsBase to 0.34 for package SimpleSDMLayers, (keep existing compat) (#185) (@github-actions[bot]) - Add methods to invert a layer (#188) (@tpoisot) - Fixes the geotiff open (#191) (@tpoisot) - bug(datasets): keychecker fails to check some wrong arguments (#193) (@tpoisot) - Improving WithinRadius performance (#196) (@gottacatchenall) - Adding Offset Arrays back as a dependency (#197) (@gottacatchenall) - Build issue on phylopic (#199) (@tpoisot) - fix(GBIF): some records are missing a synonym field (#200) (@tpoisot) - CompatHelper: add new compat entry for OffsetArrays at version 1, (keep existing compat) (#201) (@github-actions[bot]) - Change sample and add DistanceToEvent (#207) (@tpoisot) - semver(layers): fix (#209) (@tpoisot) - Bug/layers/method overwrite (#215) (@tpoisot) - CompatHelper: add new compat entry for Statistics at version 1 for package Fauxcurrences, (keep existing compat) (#218) (@github-actions[bot]) - CompatHelper: add new compat entry for Downloads at version 1 for package SimpleSDMDatasets, (keep existing compat) (#219) (@github-actions[bot]) **Closed issues:** - Reading certain tiffs with `geotiff` is wrong if the CRS is not WGS84 (#32) - Allow options to ArchGDAL driver when saving Geotiff (#30) - Add layer description to get human-readable description of layer names (#7) - Add a function to get the URL or reference for a data provider (#8) - Add a way to remove observations that are documented absences (#9) - CHELSA2 NODATA is incompatible with data type (#10) - Move pseudo-absence code to the top-level package (#11) - Unify distance generation in Fauxcurrences and pseudo-absence code (#12) - Update the GBIF docstrings (#13) - Update the model cards (#14) - Method to get the values in a layer should be values and not collect (#16) - Fix SimpleSDMLayers tests (#17) - CHELSA2 has no mask for land masses (#20) - Migrate issues about possible datasets to this repo (#28) - Clean the code handling the CRS transformation in geotiff (#35) - The order of arguments to read/save geotiffs make no sense (#38) - Vignette on scaling and quantiles (#48) - Add a method to get occurences for several taxa (#50) - The vignettes section is getting very large (#60) - The WorldClim tests are going to fail a lot (#61) - Find a way to aggregate the code coverage (#62) - Ring Ouzel example (#73) - Surface area of cells (#93) - Replace data frames function by a Tables.jl interface (#94) - Prepare repo for release of new versions (#95) - Add Boolean operations on Boolean layers (#99) - Link to documentation in the original repositories (#101) - Update plotting code to work with Makie as a default (#104) - TagBot trigger issue (#140) - Check the weight matrices in Fauxcurrences (#142) - Wrong coordinates returned when clipping with exact coordinates (#143) - IO not exported? (#145) - Split a layer into tiles (#147) - Add a test for clipping with exact coordinates (#149) - Avoid using stride when clipping (#150) - Add expand options to clip (#151) - Stitch returns the wrong bounding box in the end (#154) - Integrate with Phylopic (#157) - Update documentation (#158) - geotiff driver kwarg (#160) - downloaders break when imported as part of another module (#164) - GBIF queries get converted (for some reason) (#165) - Add method to download the high-res png (#171) - Add method to generate an attribution file OR string for Phylopic (#172) - List images by license when searching for silhouettes (#173) - Wrong return format for names when items=1 (#174) - Phylopic/GBIF integration (#175) - Get the website to build for stable versions (#178) - Using an unsupported keyword gives an error (but not the right one) (#186) - No method for -layer (#187) - Default writer should be GTiff (#190) - Writing a layer is creating a file with no extension (#192) - `sample` does not generate the expected number of background points (#194) - cellsize returns NaN for some cells more or less at random (#198) - Distance to observations for background points (#206) - Check SurfaceRangeEnveloppe (#208) - Array for a vector of layers is slow (#212) - Fauxcurrence overload issue (#214) -->