Code and data outputs for: Demographic bias in harbour porpoise strandings

This deposit contains two companion archives that must be used together to reproduce analyses and manuscript outputs.

1) porpoise-strandings-code-v1.0.0.zip
Contains analysis and manuscript source code, including:
- code/run-all.R, code/setup.R, code/analysis/*.R
- manuscript/porpoise-strandings-manuscript.Rmd
- manuscript/porpoise-strandings-supplementary.Rmd
- manuscript/render_manuscript.R
- manuscript/styles/reference.docx
- manuscript/zenodo/sessionInfo.txt

2) porpoise-strandings-data-outputs-v1.0.0.zip
Contains input data and manuscript outputs, including:
- data/raw/ (e.g., IJsseldijk_et_al_2020_strandings.csv and additional bycatch/hunting source files)
- data/metadata/strandings.md
- outputs/figures/
- outputs/supplementary_material/figures/
- outputs/supplementary_material/tables/

Reproduction steps:
1. Unzip both archives into the same parent folder.
2. Copy data/raw from the data archive into the code archive folder (<code_bundle>/data/raw).
3. From the code bundle root, run:
   - Rscript code/run-all.R
   - Rscript manuscript/render_manuscript.R false false