Published November 22, 2023 | Version 2.11.3.1
Software Open

Jalview

Authors/Creators

  • 1. Barton Group, Division of Computational Biology, School of Life Sciences, University of Dundee, Scotland, UK
  • 2. University of Konstance, Konstance, Germany
  • 3. University of Rennes, Rennes, France
  • 4. St. Olafs College, USA
  • 5. HAN University of Applied Sciences, Netherlands
  • 6. University of Vienna, Austria
  • 7. University of Santa Cruz, USA
  • 8. Universite Paris Saclay, France
  • 9. Barton Group, Division of Computational Biology, School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
  • 10. Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology
  • 11. Barton Group, School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
  • 12. School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
  • 13. Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
  • 14. Wellcome Trust Sanger Institute, Hinxton, Canbridge, UK
  • 15. School of Life Sciences, University of Dundee, Scotland, UK

Description

Jalview is a free cross-platform program for multiple sequence alignment editing, visualisation and analysis. Use it to align, view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation.

Jalview 2.11.3.1 (22 November 2023) was a patch release addressing critical bugs in the Uniprot parser and PAE annotation row selection mechanism. It ensured the jalview command-line tool was marked as executable on macOS and other systems, and improved autodetection of recent versions of Chimera and ChimeraX. The bio.tools record for Jalview was also updated and synced with the JSON in the source release.

Files

Jalview_2.11.3.1.zip

Files (610.8 MB)

Name Size
md5:f1623310652f84a469b89f16c6e7f963
48.2 MB Download
md5:b75a303a501e1dcbf0e4723c4b250b57
53.9 MB Download
md5:606a049adc45de07244825e205269257
236.0 MB Preview Download
md5:251d9bc79dc3390e7168c02ed5c80a14
227.4 MB Download
md5:2aba9e39face5ec48437a6940f647c7f
45.4 MB Download

Additional details

Related works

Is compiled by
Software: 10.5281/zenodo.15098346 (DOI)
Is part of
Software: 10.5281/zenodo.18652834 (DOI)
Is published in
Journal article: 10.1093/bioinformatics/btp033 (DOI)
References
Journal article: 10.1093/bioinformatics/btg430 (DOI)

Software

Repository URL
https://gitlab.jalview.org/jalview/jalview.git
Programming language
Java
Development Status
Active

References

  • https://www.jalview.org
  • 2020-2024 Wellcome Trust: 218259Z/19/Z The Jalview resource for biological sequence, structure and function analysis: 2019 and beyond.
  • Funding: 2014-2019 BBSRC: BB/L020742/1 The Jalview Resource for Sequence Analysis and Annotation.
  • Funding: 2013-2018 Wellcome Trust: 101651/Z/13/Z Extending The Jalview Resource for Biological Sequence Alignment and Analysis
  • Funding: 2009-2014 BBSRC: BB/G022682/1 The Jalview Resource for Sequence Analysis and Annotation - www.jalview.org.
  • Funding: 2004-2007 BBSRC: BBS/B/16542 Visualisation of Biological Sequences, Alignments and Structures - VAMSAS