Published January 18, 2022 | Version 2.11.1.7
Software Open

Jalview

Authors/Creators

  • 1. Barton Group, Division of Computational Biology, School of Life Sciences, University of Dundee, Scotland, UK
  • 2. University of Konstance, Konstance, Germany
  • 3. University of Rennes, Rennes, France
  • 4. St. Olafs College, USA
  • 5. HAN University of Applied Sciences, Netherlands
  • 6. University of Vienna, Austria
  • 7. University of Santa Cruz, USA
  • 8. Universite Paris Saclay, France
  • 9. Barton Group, Division of Computational Biology, School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
  • 10. Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology
  • 11. Barton Group, School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
  • 12. School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
  • 13. Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
  • 14. Wellcome Trust Sanger Institute, Hinxton, Canbridge, UK
  • 15. School of Life Sciences, University of Dundee, Scotland, UK

Description

Jalview is a free cross-platform program for multiple sequence alignment editing, visualisation and analysis. Use it to align, view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation.

Jalview 2.11.1.7 (18 January 2022) was the seventh patch release in the 2.11.1 series, addressing file handling issues on Windows and other non-Unix operating systems. It fixed a problem where files opened in Jalview could not be updated by either Jalview or other applications. The release also added support for AIA (Authority Information Access) download of HTTPS intermediate certificates, improving secure connection handling.

Files

Jalview_2.11.1.7.zip

Files (352.4 MB)

Name Size
md5:cd2947b04cfc790b44fe333bc0257f87
40.3 MB Download
md5:655fa8aa818586b9c4b41324a8c8554a
47.3 MB Download
md5:5391e35c5d65169a538bf6ea8c492749
115.9 MB Preview Download
md5:9cc4a7c1d329f5d7b9083b5f34c5de46
106.6 MB Download
md5:67586f898da6cfbf48dfbc08eac0ebaf
42.2 MB Download

Additional details

Related works

Is compiled by
Software: 10.5281/zenodo.15098346 (DOI)
Is part of
Software: 10.5281/zenodo.18652770 (DOI)
Is published in
Journal article: 10.1093/bioinformatics/btp033 (DOI)
References
Journal article: 10.1093/bioinformatics/btg430 (DOI)

Software

Repository URL
https://gitlab.jalview.org/jalview/jalview.git
Programming language
Java
Development Status
Active

References

  • https://www.jalview.org
  • 2020-2024 Wellcome Trust: 218259Z/19/Z The Jalview resource for biological sequence, structure and function analysis: 2019 and beyond.
  • Funding: 2014-2019 BBSRC: BB/L020742/1 The Jalview Resource for Sequence Analysis and Annotation.
  • Funding: 2013-2018 Wellcome Trust: 101651/Z/13/Z Extending The Jalview Resource for Biological Sequence Alignment and Analysis
  • Funding: 2009-2014 BBSRC: BB/G022682/1 The Jalview Resource for Sequence Analysis and Annotation - www.jalview.org.
  • Funding: 2004-2007 BBSRC: BBS/B/16542 Visualisation of Biological Sequences, Alignments and Structures - VAMSAS