Published September 27, 2011 | Version 2.7
Software Open

Jalview

Authors/Creators

  • 1. Barton Group, Division of Computational Biology, School of Life Sciences, University of Dundee, Scotland, UK
  • 2. University of Konstance, Konstance, Germany
  • 3. University of Rennes, Rennes, France
  • 4. St. Olafs College, USA
  • 5. HAN University of Applied Sciences, Netherlands
  • 6. University of Vienna, Austria
  • 7. University of Santa Cruz, USA
  • 8. Universite Paris Saclay, France
  • 9. Barton Group, Division of Computational Biology, School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
  • 10. Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology
  • 11. Barton Group, School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
  • 12. School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
  • 13. Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
  • 14. Wellcome Trust Sanger Institute, Hinxton, Canbridge, UK
  • 15. School of Life Sciences, University of Dundee, Scotland, UK

Description

Jalview is a free cross-platform program for multiple sequence alignment editing, visualisation and analysis. Use it to align, view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation.

Jalview 2.7 (27 September 2011) A major feature release with the Jalview Desktop News Reader, enhanced web services menu layout, multi-alignment to single Jmol display associations, annotation row height and order preservation in projects, visual progress indicators, Groovy script execution from URLs, and extensive applet improvements including the JalviewLite JavaScript API. Introduced drag-to-reorder annotation rows, absolute path handling, and JavaScript callbacks for applet initialization and selections.

Files

Jalview_2.7.zip

Files (631.3 MB)

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md5:6440b556acd86b4b2657c9d8e27218e7
18.7 MB Preview Download
md5:1655380a7234947db196bb814d43c316
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md5:60d3ef206947a60401e7f381870fb479
594.1 MB Download

Additional details

Related works

Is compiled by
Software: 10.5281/zenodo.15098346 (DOI)
Is part of
Software: 10.5281/zenodo.18652347 (DOI)
Is published in
Journal article: 10.1093/bioinformatics/btp033 (DOI)
References
Journal article: 10.1093/bioinformatics/btg430 (DOI)

Software

Repository URL
https://gitlab.jalview.org/jalview/jalview.git
Programming language
Java
Development Status
Active

References

  • https://www.jalview.org
  • 2020-2024 Wellcome Trust: 218259Z/19/Z The Jalview resource for biological sequence, structure and function analysis: 2019 and beyond.
  • Funding: 2014-2019 BBSRC: BB/L020742/1 The Jalview Resource for Sequence Analysis and Annotation.
  • Funding: 2013-2018 Wellcome Trust: 101651/Z/13/Z Extending The Jalview Resource for Biological Sequence Alignment and Analysis
  • Funding: 2009-2014 BBSRC: BB/G022682/1 The Jalview Resource for Sequence Analysis and Annotation - www.jalview.org.
  • Funding: 2004-2007 BBSRC: BBS/B/16542 Visualisation of Biological Sequences, Alignments and Structures - VAMSAS