Published November 15, 2010
| Version 2.6.1
Software
Open
Jalview
Authors/Creators
-
Procter, Jim (James) B.1
- Carstairs, Mungo1
- Soares, Ben1
- Mourão, Kira1
- Ofoegbu, Tochukwu 'Charles'1
- Warowny, Mateusz1
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Morell, Thomas2
- Gucciardi, Arnaud3
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Hanson, Robert 'Bob'4
- van Der Heide, Koen5
- Van Aalten, Thomas1
- Engelhardt, Jan6
- Lui, Lauren7
- Menard, Anne8
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Barton, Daniel L.9
- Sherstnev, Natasha
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Paolo di Tomasso10
- Roldan-Martinez, David
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Duce, Suzanne11
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Waterhouse, Andrew M.11
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Martin, David M. A.12
- Clamp, Michèle13
- Cuff, James13
- Searle, Steve14
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Barton, Geoffrey J.15
- 1. Barton Group, Division of Computational Biology, School of Life Sciences, University of Dundee, Scotland, UK
- 2. University of Konstance, Konstance, Germany
- 3. University of Rennes, Rennes, France
- 4. St. Olafs College, USA
- 5. HAN University of Applied Sciences, Netherlands
- 6. University of Vienna, Austria
- 7. University of Santa Cruz, USA
- 8. Universite Paris Saclay, France
- 9. Barton Group, Division of Computational Biology, School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
- 10. Centre for Genomic Regulation (CRG), The Barcelona Institute for Science and Technology
- 11. Barton Group, School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
- 12. School of Life Sciences Research, College of Life Sciences, University of Dundee, Scotland, UK
- 13. Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
- 14. Wellcome Trust Sanger Institute, Hinxton, Canbridge, UK
- 15. School of Life Sciences, University of Dundee, Scotland, UK
Description
Jalview is a free cross-platform program for multiple sequence alignment editing, visualisation and analysis. Use it to align, view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation.
Jalview 2.6.1 (15 November 2010) Added warning dialogs for web service connectivity issues, improved JABA service parameter display, and fixed Modeller PIR I/O issues. Resolved feature settings transfer for cut-and-paste views, PDB parsing for mixed amino/nucleotide chains, and CPU usage problems with multiple structure views.
Files
Jalview_2.6.1.zip
Additional details
Related works
- Is compiled by
- Software: 10.5281/zenodo.15098346 (DOI)
- Is part of
- Software: 10.5281/zenodo.18652343 (DOI)
- Is published in
- Journal article: 10.1093/bioinformatics/btp033 (DOI)
- References
- Journal article: 10.1093/bioinformatics/btg430 (DOI)
Software
- Repository URL
- https://gitlab.jalview.org/jalview/jalview.git
- Programming language
- Java
- Development Status
- Active
References
- https://www.jalview.org
- 2020-2024 Wellcome Trust: 218259Z/19/Z The Jalview resource for biological sequence, structure and function analysis: 2019 and beyond.
- Funding: 2014-2019 BBSRC: BB/L020742/1 The Jalview Resource for Sequence Analysis and Annotation.
- Funding: 2013-2018 Wellcome Trust: 101651/Z/13/Z Extending The Jalview Resource for Biological Sequence Alignment and Analysis
- Funding: 2009-2014 BBSRC: BB/G022682/1 The Jalview Resource for Sequence Analysis and Annotation - www.jalview.org.
- Funding: 2004-2007 BBSRC: BBS/B/16542 Visualisation of Biological Sequences, Alignments and Structures - VAMSAS