Benchmark and analysis code for the article "Multi-context seeds enable fast and high-accuracy read mapping"

These repositories contain code and instructions needed to reproduce figures and tables from the manuscript

Ivan Tolstoganov, Marcel Martin, Nicolas Buchin, Kristoffer Sahlin. Multi-context seeds enable fast and high-accuracy read mapping (accepted in Genome Biology)

Preprint version https://doi.org/10.1101/2024.10.29.620855

Please use

1. strobealign-evaluation-58494fa107c1bda7fafb46cab4afdecab2cee952.tar.gz
   
   To reproduce Figures 2, 3, and S1 - S15
   Repository link
2. matching-benchmark-e0f2e72ff156f0f4a11cc93abd0c0bfa5a0e5203.tar.gz
   
   To reproduce Tables 1 and S1
   Repository link
3. uniqueness-benchmark-d4fd41c5217984258d2b687ecc847b65b4f83b24.tar.gz
   
   To reproduce Table 2
   Repository link
4. variant_calling-aff748e44e202ee32de488b00df424aea25baf62.tar.gz
   
   To reproduce Figure S16
   Repository link
5. bit-allocation-3fb57c624fa25e1d3edb8d8d15e784eb8000637f.tar.gz
   
   To reproduce Figure S17
   Repository link