Published February 13, 2026
| Version v1
Dataset
Open
Index 10x_gex-GRCh38-2024-A
Authors/Creators
- 1. The George Washington University
- 2. Feinstein Institutes for Medical Research
Description
Prebuilt index 10x_gex-GRCh38-2024-A for STAR_2.7.11b
Notes
10x_gex-GRCh38-2024-A
Pre-built index for STAR_2.7.11b
Workflow
Workflow to generate index is found at: bendall-lab/referenceDB
Using commit:38cc3d0
Genome
Sequences (id: 10x_gex-GRCh38-2024-A_gencode_names)
GRCh38 reference sequence data from 10x genomics, gencode names
steps:extract [tar, pattern=refdata-gex-GRCh38-2024-A/fasta/genome.fa]compress [bgzip]index [samtools faidx]
10x/refdata-gex-GRCh38-2024-A.tar.gz- URL: https://cf.10xgenomics.com/supp/cell-exp/refdata-gex-GRCh38-2024-A.tar.gz
- Modified: Fri, 08 Mar 2024 21:33:57 GMT
- Retrieved: Thu Feb 12 10:29:16 PM UTC 2026
Annotation (id: 10x_gex-GRCh38-2024-A_gencode_names)
GRCh38 reference annotation data from 10x genomics, gencode names
steps:extract [tar, pattern=refdata-gex-GRCh38-2024-A/genes/genes.gtf.gz]sort [gtfutils sort, genomefile=refDB/sequences/10x_gex-GRCh38-2024-A_gencode_names/genome.fna.gz.fai]compress [bgzip]index [tabix]
10x/refdata-gex-GRCh38-2024-A.tar.gz- URL: https://cf.10xgenomics.com/supp/cell-exp/refdata-gex-GRCh38-2024-A.tar.gz
- Modified: Fri, 08 Mar 2024 21:33:57 GMT
- Retrieved: Thu Feb 12 10:29:16 PM UTC 2026
Files
Files
(27.1 GB)
| Name | Size | |
|---|---|---|
|
md5:bb079c4c17400508be0a5b36f91fd734
|
27.1 GB | Download |