Published 2026
| Version V1
Dataset
Open
Accurate Macromolecular Complex Modeling for Cryo-EM with CryoZeta
Authors/Creators
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Zhang, Zicong
(Data manager)1
- Li, Shu (Data collector)1
- Farheen, Farhanaz (Data collector)1
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Kagaya, Yuki
(Data collector)1
- Liu, Boyuan (Data collector)1
- Ibtehaz, Nabil (Data collector)1
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Terashi, Genki
(Data collector)1
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Nakamura, Tsukasa
(Data collector)2
- Zhu, Han (Data collector)1
- Kafi, Khan (Data collector)1
- Zhang, Yuanyuan (Data collector)1
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Kihara, Daisuke
(Supervisor)1
-
1.
Purdue University West Lafayette
-
2.
KEK Applied Research Laboratory
Description
We prepared CryoZeta benchmark dataset to evaluate structure modeling of proteins and nucleic acids in cryo-EM maps. The dataset consists of 4 subsets organized by model variants and benchmark datasets:
- CryoZeta (Structures of CryoZeta on 200 test entries)
- CryoZeta-Interpolate (Structures of CryoZeta-Interpolate on 200 test entries)
- CryoZeta-Combine (Structures of CryoZeta-Combine on 200 test entries)
- CryoZeta_large_complex (Structures of CryoZeta on 51 large complex test entries)
Each directory contains CIF format models generated by the corresponding CryoZeta variants, named as CryoZeta_[PDBID].cif, which correspond to PDB entries (e.g., CryoZeta_9mk9.cif for 9MK9 in PDB).
Files
Files
(176.8 MB)
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md5:6c0d9f90722de4c32f9dfee379800499
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