Published February 10, 2026 | Version v4
Dataset Open

SARS-CoV-2 mutational trajectories dataset

  • 1. ROR icon Charles University
  • 2. ROR icon Weizmann Institute of Science

Description

This dataset contains mutation frequency data derived from in vitro evolution experiments of the SARS-CoV-2 spike receptor-binding motif (RBM), conducted under low-stringency (LSS) and high-stringency (HSS) selection pressures. The data capture position-specific mutation distributions and frequencies across multiple rounds of selection and across several RBM variants. These experiments were designed to assess how laboratory-driven evolution parallels the natural evolution of SARS-CoV-2, particularly in the context of ACE2 receptor binding — the critical first step in viral infection.

Files

per_residue_observed_codon_frequencies.zip

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Additional details

Funding

Ministry of Education Youth and Sports
National Infrastructure for Biological and Medical Imaging LM2023050 Czech-BioImaging
European Commission
The National Institute of Virology and Bacteriology LX22NPO5103
Czech Science Foundation
Unveiling Divergence and Convergence Points in Coronavirus Evolution for Host Receptor Recognition 25-17643M
Czech Science Foundation
Institutional support of the Institute of Biotechnology RVO:86652036
Ministry of Education Youth and Sports
e-INFRASTUCTURE CZ LM2023054
Ministry of Education Youth and Sports
Modernization of e-INFRA CZ II CZ.02.01.01/00/23_016/0008329
Ministry of Education Youth and Sports
ELIXIR-CZ LM2023055
Ministry of Education Youth and Sports
ELIXIR CZ: Capacity extension CZ.02.01.01/00/23_015/0008210

Software

Repository URL
https://github.com/host-patho-evo/mutation_scatter_plot
Programming language
Python
Development Status
Active