Published February 10, 2026 | Version 1.2.3
Software Open

nf-core/rnavar: nf-core/rnavar 1.2.3 - Yellow Hammer Head

  • 1. Karolinka Institute
  • 2. Center for Medical Genetics Ghent
  • 3. ZS Associates
  • 4. @CenterForMedicalGeneticsGhent
  • 5. Seqera
  • 6. University of Brasilia @compgenunb
  • 7. @seqeralabs
  • 8. Seqera Labs
  • 9. Robert Bosch GmbH

Description

  • Minor code refactoring
  • Topic versions everywhere
  • Nextflow strict syntax everywhere
  • workflow output conversion started

What's Changed

  • back to dev by @maxulysse in https://github.com/nf-core/rnavar/pull/266
  • Update all modules by @maxulysse in https://github.com/nf-core/rnavar/pull/267
  • Feat: Refactor pipeline tests suite by @maxulysse in https://github.com/nf-core/rnavar/pull/268
  • Update MultiQC to 1.33 by @maxulysse in https://github.com/nf-core/rnavar/pull/269
  • FEAT: Always capture warnings in snapshots by @maxulysse in https://github.com/nf-core/rnavar/pull/270
  • Update some modules for topics migration by @maxulysse in https://github.com/nf-core/rnavar/pull/272
  • FEAT: mosdepth on input cram files + re-organize file publishing by @maxulysse in https://github.com/nf-core/rnavar/pull/273
  • Add Nextflow lint by @maxulysse in https://github.com/nf-core/rnavar/pull/274
  • CHORES: MultiQC in its own folder + rescue md metrics by @maxulysse in https://github.com/nf-core/rnavar/pull/275
  • Fix --help with strict syntax mode by @ewels in https://github.com/nf-core/rnavar/pull/278
  • Add more lint test by @maxulysse in https://github.com/nf-core/rnavar/pull/279
  • Publish snpeff and vep reports via workflow output and topics by @maxulysse in https://github.com/nf-core/rnavar/pull/277
  • More topics by @maxulysse in https://github.com/nf-core/rnavar/pull/280
  • Minor code refactoring before release by @maxulysse in https://github.com/nf-core/rnavar/pull/281
  • Prepare release 1.2.3 by @maxulysse in https://github.com/nf-core/rnavar/pull/282
  • Release 1.2.3 by @maxulysse in https://github.com/nf-core/rnavar/pull/283

New Contributors

  • @ewels made their first contribution in https://github.com/nf-core/rnavar/pull/278

Full Changelog: https://github.com/nf-core/rnavar/compare/1.2.2...1.2.3

Files

nf-core/rnavar-1.2.3.zip

Files (892.7 kB)

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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/rnavar/tree/1.2.3 (URL)

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