Published February 6, 2026
| Version v3.0.4.0
Software
Open
github.com/broadinstitute/viral-pipelines/metagenomic_denovo
Authors/Creators
Description
Assisted de novo viral genome assembly (SPAdes, scaffolding, and polishing) from metagenomic raw reads. Runs raw reads through taxonomic classification (Kraken2), human read depletion (based on Kraken2 and optionally using BWA, BLASTN, and/or BMTAGGER databases), and FASTQC/multiQC of reads.
Files
github.com-broadinstitute-viral-pipelines-metagenomic_denovo_v3.0.4.0.zip
Files
(51.2 kB)
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md5:b79a279c93c65c0e092bd05e806ca230
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Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.18506715 (URL)
- https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/metagenomic_denovo:v3.0.4.0 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fviral-pipelines%2Fmetagenomic_denovo/versions/v3.0.4.0/PLAIN-WDL/descriptor/metagenomic_denovo.wdl (URL)