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Published February 6, 2026 | Version v3.0.4.0
Software Open

github.com/broadinstitute/viral-pipelines/detect_cross_contamination_precalled_vcfs

Authors/Creators

Description

Detect cross-contamination between samples using consensus-level and sub-consensus variation, from consensus genomes and pre-called LoFreq vcf files.

Files

github.com-broadinstitute-viral-pipelines-detect_cross_contamination_precalled_vcfs_v3.0.4.0.zip

Files (6.8 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.18506671 (URL)
https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/detect_cross_contamination_precalled_vcfs:v3.0.4.0 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fviral-pipelines%2Fdetect_cross_contamination_precalled_vcfs/versions/v3.0.4.0/PLAIN-WDL/descriptor/detect_cross_contamination_precalled_vcfs.wdl (URL)