Published February 4, 2026
| Version RNAWithUMIsPipeline_v1.0.20
Software
Open
github.com/broadinstitute/warp/atac
Authors/Creators
Description
Processing for single-cell ATAC-seq data from the level of raw fastq reads. This is the first step of the multiome pipeline. ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) is a technique used in molecular biology to assess genome-wide chromatin accessibility. This pipeline processes 10x Genomics Multiome ATAC FASTQ files.
Files
github.com-broadinstitute-warp-atac_RNAWithUMIsPipeline_v1.0.20.zip
Files
(22.8 kB)
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md5:dc3e296a1af7326793384d93dd16f564
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Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.18488445 (URL)
- https://dockstore.org/workflows/github.com/broadinstitute/warp/atac:RNAWithUMIsPipeline_v1.0.20 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2Fatac/versions/RNAWithUMIsPipeline_v1.0.20/PLAIN-WDL/descriptor/atac.wdl (URL)