Dockstore
Published June 23, 2026 | Version BuildIndices_v5.1.1
Software Open

github.com/broadinstitute/warp/SlideSeq

Authors/Creators

Description

Processes Slide-seq bead data: aligns reads with STARsolo, computes cell/gene/UMI metrics, and produces a sparse count matrix and h5ad output file

Files

github.com-broadinstitute-warp-SlideSeq_BuildIndices_v5.1.1.zip

Files (28.1 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.20817063 (URL)
https://dockstore.org/workflows/github.com/broadinstitute/warp/SlideSeq:BuildIndices_v5.1.1 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fwarp%2FSlideSeq/versions/BuildIndices_v5.1.1/PLAIN-WDL/descriptor/SlideSeq.wdl (URL)