Published February 4, 2026
| Version v1
Dataset
Open
TDP-43 Knockout RNA-seq Data - Chromosome-specific Packages (GSE136366)
Description
This dataset contains chromosome-specific RNA-seq data packages for bioinformatics training purposes.
Original Study: GSE136366 - TDP-43 regulates LC3ylation and autophagosome-lysosome fusion
Reference: Roczniak-Ferguson A, Ferguson SM. Life Sci Alliance. 2019 Oct;2(5). PMID: 31527135
Contents:
- chromosome-specific data packages
- Each package contains paired-end FASTQ files for 6 samples (3 KO + 3 WT)
Usage: These packages are designed for Bioinformatics Training.
Notes
Data derived from NCBI GEO accession GSE136366. Reads have been aligned to GRCh38 and extracted by chromosome for educational purposes.
Files
chr1_data.zip
Files
(37.0 GB)
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Additional details
Related works
- Is supplement to
- Journal article: 10.26508/lsa.201900358 (DOI)
- Dataset: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE136366 (URL)