Published February 4, 2026 | Version v1
Model Open

Protein-vec trained model for Functional Protein Mining with Conformal Guarantees (preservation copy for reproducibility)

Authors/Creators

  • 1. ROR icon University of California, Berkeley

Description

This is a preservation copy of the Protein-Vec model by Hamasy et al 2023, originally published at:

- https://www.biorxiv.org/content/10.1101/2023.11.26.568742v1

- https://github.com/tymor22/protein-vec

 

This model was essential to our work Functional Protein Mining with Conformal Guarantees published in Nature Communications in 2025. As of 4 Feb 2026, the original download link is no longer accessible. We are re-uploading this model to ensure reproducibility of our published work. All credit for model development goes to the original authors. Please cite their original work: 

Learning sequence, structure, and function representations of proteins with language models
Tymor Hamamsy, Meet Barot, James T. Morton, Martin Steinegger, Richard Bonneau, Kyunghyun Cho
bioRxiv 2023.11.26.568742; doi: https://doi.org/10.1101/2023.11.26.568742

For questions about the model itself, please contact the original authors.

Files

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Additional details

Related works

Is published in
Publication: 10.1101/2023.11.26.568742 (DOI)

Dates

Updated
2026-02-06