CCR Collaborative Bioinformatics Resource [CCBR]

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Published February 3, 2026 | Version v2.7.4
Software Open

RENEE: Rna sEquencing aNalysis pipElinE

Authors/Creators

  • 1. Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA

Description

  • New --partition option for renee run and renee build to specify the SLURM partition. (#252, @kelly-sovacool)
    • This feature is necessary for users who do not have access to the norm partition on biowulf, such as students.
  • Fix bug in phred_encoding.py that incorrectly detected Phred+33 files as Phred+64, causing BBMerge to fail. (#257, @kelly-sovacool)

Notes

Please cite RENEE as below.

Files

CCBR/RENEE-v2.7.4.zip

Files (11.1 MB)

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md5:74e7f8c3550de332b94c3ff8ebc13a0c
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Additional details

Related works

Is supplement to
Software: https://github.com/CCBR/RENEE/tree/v2.7.4 (URL)

Software

Repository URL
https://github.com/CCBR/RENEE