Coarse-grained (CG) files for the paper "Assembly of two functionally-distinct protein import complexes in the outer  membrane of plant chloroplasts"

"Assembly of two functionally-distinct protein import complexes in the outer  membrane of plant chloroplasts" 
 Sreedhar Nellaepalli, Domagoj Baretić, Astrid F. Brandner, Sybille Kubis-Waller, Duorong Xu, Ziad Soufi, Shuyang Cheng, Sireesha Kodru, Jun Fang , Ursula Flores-Perez, Vaishnavi Ravikumar, Pablo Pulido, Marjorie Fournier, Ivan Ahel, Syma Khalid , and R. Paul Jarvis

[placeholder for doi after publication]

Also corresponding to the following preprint: https://www.biorxiv.org/content/10.1101/2025.10.27.683105v1

1) MD_runs_files.zip

Martini 2.2 coarse-grained files for the 3 replicas run with GROMACS v2021.4 (folders: run1, run2, run3):

Each folder cotains:

• Final equilibrated CG structure used as starting point of production runs: eq2.gro
• Production molecular dynamics parameter input file: prod.mdp
• Gromacs full MD input file: prod.tpr
• Processed iInitial CG structure of  production run (t = 0): run[X]_prod_t0.pdb
• Processed final CG structure at t = 10 μs : run[X]_prod_10us.pdb