nf-core

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Published February 2, 2026 | Version 5.0.0
Software Open

nf-core/airrflow: Tarantallegra

Authors/Creators

  • 1. Boehringer Ingelheim
  • 2. oNKo-innate
  • 3. @seqeralabs
  • 4. Seqera
  • 5. Tgen
  • 6. Robert Bosch GmbH

Description

Added

  • #413 Bump versions to dev.
  • #413 Updated nf-core template to v3.3.2.
  • #413 Speeding up tests with smaller test data.
  • #416 Update Takara protocol names and docs. Add Takara SMART-seq protocol.
  • #416 Add first nf-test.
  • #422 Template update to nf-core v3.4.1
  • #425 Add all nf-tests.
  • #431 Update nf-test snapshots and acknowledgements.
  • #436 Update amulety modules and version.
  • #437 Bump versions to 4.4.0.
  • #441 Bump versions to 5.0, small syntax and docs fixes.

Fixed

  • #413 Add amulety versions in multiQC report.
  • #413 Fixed bug in sans-umi worklfow revpr parameter.
  • #416 Subsample reads for report_threshold process.
  • #416 Removed a variable that was defined twice.
  • #416 Renamed define_clones to clonal_assignment.
  • #416 Fixed bug in number of sequences report.
  • #416 Fixed bug in report file size.
  • #422 Fixed annoying automatic clonal threshold message on any failure.
  • #418 Fixed reassign false option and added tests.

Dependencies

| Dependency | Old version | New version | | ---------- | ----------- | ----------- | | enchantr | 0.1.20 | 0.1.24 | | presto | 0.7.4 | 0.7.6 | | dowser | 2.3 | 2.4.0 | | amulety | 1.0 | 2.1.1 | | multiqc | 1.27 | 1.32 | | trust4 | 1.0.13 | 1.1.5 |

Deprecations and changes

  • The clontech_umi_tcr protocol has been renamed to takara_smartseq_umi_tcr to reflect the new protocol name.

Files

nf-core/airrflow-5.0.0.zip

Files (4.5 MB)

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md5:c550c41754897e89decda0409c20b06b
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/airrflow/tree/5.0.0 (URL)

Software

Repository URL
https://github.com/nf-core/airrflow