Published January 29, 2026 | Version v3.0.9
Software Open

Single-cell RNA sequencing (scRNA-seq) Data Processing & Visualization Workflow

Authors/Creators

  • 1. CeMM Research Center for Molecular Medicine

Description

A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.

Notes

If you use this software, please cite it using the metadata from this file.

Files

epigen/scrnaseq_processing_seurat-v3.0.9.zip

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Additional details

Related works

Is supplement to
Software: https://github.com/epigen/scrnaseq_processing_seurat/tree/v3.0.9 (URL)

Software

Repository URL
https://github.com/epigen/scrnaseq_processing_seurat