Published January 29, 2026 | Version v1
Dataset Open

In-Silico Library of Hydro-Optimized Peptide Constructs via Ontological Metrics (TCDS Genesis Dataset)

Description

Current computational biology paradigms rely heavily on evolutionary homology to predict protein stability, limiting design space to structures with natural antecedents. This work introduces the Synchronous Chromodynamic Theory (TCDS), a deterministic framework that models protein stability as a vector equilibrium between Internal Pressure ($Q$) and Substrate Density ($\Sigma$).We present a unified dataset of 100 de novo peptide sequences generated by the OmniKernel Genesis engine. These constructs are optimized for hydrodynamic locking in aqueous environments ($\Sigma=1.0$) but possess internal density metrics ($Q > 25.0$) that suggest hyper-stability in high-energy environments where biological matter typically fails. Crucially, these sequences have zero Multiple Sequence Alignment (MSA) matches, yet are predicted by AlphaFold to fold with high confidence (pLDDT > 90), validating the TCDS hypothesis that physical geometry, not just evolutionary history, dictates structural viability.This dataset serves as the foundational proof-of-concept for "Solid-State Biology," a new class of programmable matter designed for extreme substrates including vacuum and stellar plasma.

Files

Paper_Folder (1).pdf

Files (539.3 kB)

Name Size Download all
md5:59f5f040527e22113e9a4dae833e7a2f
150.5 kB Preview Download
md5:6064284d9ee0b0c170f3b8516649699a
150.5 kB Preview Download
md5:e92013fb9c0e3f6d7b1a45010f2bca47
230.0 kB Preview Download
md5:ab3462879af17cdbfca6be2bd3b7b214
8.2 kB Preview Download