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Published January 28, 2026 | Version v1.0.1
Software Open

github.com/mjfos2r/ONT_Autocycler/ONT_Autocycler

Authors/Creators

  • 1. Massachusetts General Hospital

Description

Pipeline for the execution of autocycler to generate robust denovo assemblies of bacterial genomes. Adapted from Ryan Wick's script at: https://github.com/rrwick/Autocycler/blob/main/pipelines/Automated_Autocycler_Bash_script_by_Ryan_Wick/autocycler_full.sh

Files

github.com-mjfos2r-ONT_Autocycler-ONT_Autocycler_v1.0.1.zip

Files (10.4 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.18406445 (URL)
https://dockstore.org/workflows/github.com/mjfos2r/ONT_Autocycler/ONT_Autocycler:v1.0.1 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fmjfos2r%2FONT_Autocycler%2FONT_Autocycler/versions/v1.0.1/PLAIN-WDL/descriptor/ONT_Autocycler.wdl (URL)