Benchmarking-Initiative/Benchmark-Models-PEtab: Benchmark Models PEtab v2026.01.24

What's Changed

• Add .git_archival.txt by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/255
• add the reformulated version of Fiedler_BMCSystBiol2016 by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/258
• Fix observable definition by @FFroehlich in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/261
• add new references by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/262
• Deploy to pages by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/265
• pages: Add overview table by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/266
• pages: replace URLs by icons by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/267
• Rename xml files by @stephanmg in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/269
• Bump actions/checkout from 4 to 5 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/271
• Bump actions/upload-pages-artifact from 3 to 4 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/272
• Bump actions/setup-python from 5 to 6 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/273
• Add get_simulation_df by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/274
• Fix simulation files by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/276
• Add CODEOWNERS by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/282
• Fix Lucarelli_CellSystems2018 simulation table by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/281
• Sneyd model updates by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/285
• Beer model fixes by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/283
• Visualization fixes by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/284
• Lucarelli visualization by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/286
• Visualization fixes for some benchmark models. by @stephanmg in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/289
• Vis fixes #2 by @stephanmg in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/290
• add visualization spec for Raimundez model by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/288
• add Blasi visualization spec by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/291
• Zheng model visualization spec by @plakrisenko in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/294
• Bump actions/checkout from 5 to 6 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/295
• GHA: Add simulation workflow by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/296
• Simplify Froehlich_CellSystems2018 condition table by @dweindl in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/293
• Bump actions/checkout from 5 to 6 by @dependabot[bot] in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/297
• Add two references by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/298
• Update install instruction in checklist by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/299
• add new model Liu_IFACPapersOnLine2025 by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/260
• Fix simulation Weber_BMC2015 by @m-philipps in https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/300

Full Changelog: https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/compare/v2024.11.11...v2026.01.24