nf-core

There is a newer version of the record available.

Published January 23, 2026 | Version 1.1.0
Software Open

nf-core/viralmetagenome: v1.1.0 - Virid Hen

Authors/Creators

  • 1. Center for Medical Genetics Ghent
  • 2. @ScilifelabDataCentre

Description

v1.1.0 - 2026-01-23

Added

  • Add subworkflow tests of fasta_fastq_clust and fasta_contig_clust #253 (by @Joon-Klaps)
  • Add subworkflow tests for preprocessing_illumina and fastq_fastqc_umitools_trimmomatic #255 (by @Joon-Klaps)

Fixed

  • Fix memory issues for network_cluster #105 by switching to Clusty #251 (by @Joon-Klaps)
  • Improve memory efficiency and speed of FASTA sequence extraction #252 (by @Joon-Klaps)
  • Fix bug of clusty not handling single genome distance files well #253 (by @Joon-Klaps)
  • Fix reported trimmomatic bug #254 'no such variable "trim_read_count"' #255 (by @Joon-Klaps)
  • Fix descrepancy of documentation and actual arguments #256 (by @Joon-Klaps)
  • Fix performance issues with extract_cluster.py for large datasets #259 (by @Joon-Klaps)

Dependencies

| Dependency | Old version | New version | | ---------- | ----------- | ----------- | | clusty | N/A | 1.2.2 |

Files

nf-core/viralmetagenome-1.1.0.zip

Files (9.1 MB)

Name Size Download all
md5:caf74d9dfd6688fdd6baa7d106929840
9.1 MB Preview Download

Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/viralmetagenome/tree/1.1.0 (URL)

Software

Repository URL
https://github.com/nf-core/viralmetagenome