VCF containing PoolSeq data accompanying the manuscript entitled "Genetic and morphological diversity in spontaneous populations of Brassica rapa: how do feral populations differ from wild ones?"

"brapa119_freebayes_noclump.vcf.gz" is a compressed VCF containing PoolSeq data accompanying the manuscript entitled "Genetic and morphological diversity in spontaneous populations of Brassica rapa: how do feral populations differ from wild ones?" The dataset comprises 119 populations: 62 “spontaneous” B. rapa populations collected in the wild in Algeria (28), Italy (17), France (16) and Slovenia (1); and 55 B. rapa landraces collected through direct collection from farms in Algeria (22), Tunisia (5) and Italy (5), or from Biological Resource Centers (BRC) that maintain old landraces in France (BRC BrACySol, 21) and Slovenia (BRC KIS, 2), as well as two Italian landraces. See Falentin et al. (2024) for details about population sampling. Details of the variant calling pipeline can be found in the aforementioned manuscript "Genetic and morphological diversity in spontaneous populations of Brassica rapa: how do feral populations differ from wild ones?"

References:

Falentin, C., H. Hadj-Arab, F. Aissiou, C. Bartoli, G. Bazan, M. Boudet, L. Bousset-Vaslin, M. Chwikhi, O. Coriton, G. Deniot, J. Ferreira de Carvalho, L. Gay, A. Geraci, P. Glory, V. Huteau, R. Ilahy, V. Ilardi, J. A. Jarillo, V. Meglič, E. Oddo, M. Pernas, M. Piñeiro, B. Pipan, T. Rhim, V. Richer, F. Rizza, J. Ronfort, M. Rousseau-Gueutin, R. Schicchi, L. Sinkovič, M. Taburel, V. Terzi, S. Théréné, M. Tiret, I. Tlili, F. Werner Badeck, and A. M. Chèvre. 2024. Combined cytogenetic and molecular methods for taxonomic verification and description of Brassica populations deriving from different origins. Genetic Resources 5:61-71.