Dockstore

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Published January 20, 2026 | Version v0.3
Software Open

github.com/iwc-workflows/host-contamination-removal-short-reads/main

Authors/Creators

  • 1. Institut Français de Bioinformatique

Description

This workflow takes paired-end Illumina fastq(.gz) files and runs Bowtie to map the reads against a reference genome (human, by default) and keep only the reads that do not align. MultiQC is used to aggregate the mapping reports.

Files

github.com-iwc-workflows-host-contamination-removal-short-reads-main_v0.3.zip

Files (3.7 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.18311351 (URL)
https://dockstore.org/workflows/github.com/iwc-workflows/host-contamination-removal-short-reads/main:v0.3 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhost-contamination-removal-short-reads%2Fmain/versions/v0.3/PLAIN-gxformat2/descriptor/host-or-contamination-removal-on-short-reads.ga (URL)