Published January 20, 2026 | Version v3.0.0
Software Open

krishnanlab/PyGenePlexus: v3.0.0

Authors/Creators

  • 1. Carnegie Mellon University
  • 2. University of Colorado Anschutz

Description

What's Changed

  • Multiple species returned in one run by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/375
  • Add Clustering Functionality by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/381
  • initial adding of domino by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/403
  • changed to one-sided p-val test by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/413
  • refactored default params for API and CLI by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/415
  • fixed file name issue in #404 by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/416
  • fix and update pytests by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/417
  • Add documentation for clustering and saving additions by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/419
  • Bump to 3.0.0.dev0 by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/422
  • Save Std_Scale Properly by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/424
  • v3-dev-fixes by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/427
  • bump version 3.0.0dev0 to v3.0.0 by @ChristopherMancuso in https://github.com/krishnanlab/PyGenePlexus/pull/428

Full Changelog: https://github.com/krishnanlab/PyGenePlexus/compare/v2.0.4...v3.0.0

Files

krishnanlab/PyGenePlexus-v3.0.0.zip

Files (8.2 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/krishnanlab/PyGenePlexus/tree/v3.0.0 (URL)

Software

Repository URL
https://github.com/krishnanlab/PyGenePlexus