Li-Chia-ching/Alfalfa_Phenotypic_Clustering_Analysis: v3.0: Alfalfa Phenotype Analysis Tool

Major Updates / 主要更新:

1. Enhanced Visualization / 增强可视化:

   • Branch lines changed to black for better clarity (树枝线条改为黑色,提升清晰度)
   • Line width adjusted to 1.5pt (线宽调整为1.5磅)

2. Maintained Accessibility / 保持可访问性:

   • Dark2 color scheme preserved for labels and color bars (标签和色块维持Dark2配色方案)
   • Cluster legend colors unchanged for color-blind friendly display (图例颜色不变,色弱友好)

3. Added Interpretation Guide / 新增分类解释指南:

   • New 04_Cluster_Interpretation.txt file explains cluster meaning and limitations (新增解释文件说明聚类意义和局限性)
   • Provides optimization suggestions for future analysis (提供后续分析优化建议)

Technical Details / 技术细节:

• Updated code: set("branches_col", "black") and set("branches_lwd", 1.5) (更新代码:设置树枝颜色和宽度)
• Maintained: color_labels(k = k, col = cluster_cols) with Dark2 palette (维持:使用Dark2配色的标签颜色)

Key Benefit / 主要优势: Clearer dendrogram visualization with enhanced readability while maintaining accessibility. (更清晰的树状图可视化,提升可读性,同时保持可访问性)