AstrobioMike/bit: v1.13.6

Added

• bit-get-mapped-reads-pid to pull out percent-identity information of mapped reads from an input bam
  • for each mapped read:
    • calculated percent ID = (full_aligned_length - NM) / full_aligned_length * 100
      • where full_aligned_length = Matches + Mismatches + Insertions + Deletions
• added a 'genome' option to bit-get-test-data that pulls an E. coli genome

Changed

• modularized and added tests for bit-get-workflow, bit-get-test-data, bit-dedupe-fasta-headers, bit-fasta-to-genbank, and bit-fasta-to-bed
• added more tests to bit-gen-reads
• improved coverage on some other modules with more unit tests
• moved more setup info into pyproject.toml, but retained minimal setup.py to be able to glob because bit has a lot of separate scripts