Published January 14, 2026
| Version v1
Computational notebook
Mutational profile analysis in patient-derived neuroendocrine tumor models
Authors/Creators
Description
This repository contains the computational workflows used to analyze somatic variation and clonal dynamics in patient-derived gastroenteropancreatic neuroendocrine tumor (GEP-NET) organoids. Scripts implement Mutect2-based somatic variant calling followed by superFreq-based clonal tracking across longitudinal samples, with downstream visualization and summary analyses.