Published January 14, 2026 | Version v1
Dataset Open

FREEDA genome assemblies (NCBI GenBank) - Rodents - Reference genome

Description

Description
This record provides a curated snapshot of public NCBI GenBank genome assembly FASTA files used as reference inputs for the FREEDA pipeline. Assemblies are redistributed unchanged for convenience and reproducibility.

Provenance and identifiers: Each genome is identified by its NCBI GenBank assembly accession and version as listed in FREEDA_genomes.xlsx, along with the corresponding NCBI Assembly URLs. Users should cite the original genome resources via their accessions and any associated primary publications.

Rights note: NCBI places no restrictions on the use or distribution of GenBank molecular data, but notes that some original submitters (or countries of origin) may assert patent/copyright/other IP claims in portions of submitted data; users are responsible for compliance where applicable.

Related work: This dataset supports the FREEDA pipeline described in: https://doi.org/10.1083/jcb.202212084 (added under “Related works”).

Files

Files (2.8 GB)

Name Size Download all
md5:c5e676beee556f05f26b64a225cb3bee
20.4 kB Download
md5:c59ed4d4adf94d5d595b8e481e99bab1
2.8 GB Download
md5:3ad4d759b7f4717758ca4053c5070314
21.1 kB Download

Additional details

Related works

Is supplement to
Journal article: 10.1083/jcb.202212084 (DOI)

Software