bigbio/quantms: 1.7.0 - Caracas

What's Changed

• Increase dev version by @ypriverol in https://github.com/bigbio/quantms/pull/579
• fixing of bug in msstats_tmt.R (Issue: Error in the msstats_tmt.R function parse_contrasts #577) by @kai-lawsonmcdowall in https://github.com/bigbio/quantms/pull/578
• Pass correct flag to ProteinQuantifier by @johnne in https://github.com/bigbio/quantms/pull/581
• fixed rescoring range bugs by @daichengxin in https://github.com/bigbio/quantms/pull/583
• update pmultiqc version 0.0.36 by @ypriverol in https://github.com/bigbio/quantms/pull/595
• Support ppm fragment tolerance via alphapeptdeep feature generator by @Copilot in https://github.com/bigbio/quantms/pull/597
• minor bug change to pmultiqc by @ypriverol in https://github.com/bigbio/quantms/pull/598
• :bug: allow editing using nf-core pipelines schema build by setting fa_icon by @enryH in https://github.com/bigbio/quantms/pull/590
• :art: address ifEmpty(null) by @enryH in https://github.com/bigbio/quantms/pull/600
• Upgrade trfp 1.3.4 -> 1.4.5 by @ypriverol in https://github.com/bigbio/quantms/pull/601
• Add support for TMT16 and TMT18 correction matrix files by @MaLLLiYA in https://github.com/bigbio/quantms/pull/599
• Update and clarify SDRF and Json-Parameter parsing by @enryH in https://github.com/bigbio/quantms/pull/596
• Reduce logo size used in pmultiqc by @yueqixuan in https://github.com/bigbio/quantms/pull/605
• More linting by @enryH in https://github.com/bigbio/quantms/pull/602
• some updates related with diann, ptms and pmultiqc small issues by @ypriverol in https://github.com/bigbio/quantms/pull/614
• update quantms-utils 0.0.24 & pmultiqc 0.0.39 by @ypriverol in https://github.com/bigbio/quantms/pull/615
• Fix trailing whitespace and code formatting by @Copilot in https://github.com/bigbio/quantms/pull/618
• Format by @enryH in https://github.com/bigbio/quantms/pull/603
• bug fix when parameter model_dir is wrongly provided by @ypriverol in https://github.com/bigbio/quantms/pull/619
• Error of quantms-rescoring process with AWS by @ypriverol in https://github.com/bigbio/quantms/pull/621
• Add support for .dia file format and improve file format documentation by @Copilot in https://github.com/bigbio/quantms/pull/623
• Add onsite module by @weizhongchun in https://github.com/bigbio/quantms/pull/626
• move thermorawfileparser from local to bigbio nf-core by @daichengxin in https://github.com/bigbio/quantms/pull/627
• update quantms-rescoring to support MS2 transfer learning by @daichengxin in https://github.com/bigbio/quantms/pull/629
• fixed quantms-rescoring by @daichengxin in https://github.com/bigbio/quantms/pull/631
• using the bigbio onsite module by @weizhongchun in https://github.com/bigbio/quantms/pull/630
• Fix some issues in onsite by @weizhongchun in https://github.com/bigbio/quantms/pull/634
• small changes for release by @ypriverol in https://github.com/bigbio/quantms/pull/635
• minor changes for release by @ypriverol in https://github.com/bigbio/quantms/pull/636
• Minor changes by @ypriverol in https://github.com/bigbio/quantms/pull/637
• Release 1.7.0 - Major changes with quantms-rescoring by @ypriverol in https://github.com/bigbio/quantms/pull/625

New Contributors

• @kai-lawsonmcdowall made their first contribution in https://github.com/bigbio/quantms/pull/578
• @johnne made their first contribution in https://github.com/bigbio/quantms/pull/581
• @MaLLLiYA made their first contribution in https://github.com/bigbio/quantms/pull/599
• @weizhongchun made their first contribution in https://github.com/bigbio/quantms/pull/626

Full Changelog: https://github.com/bigbio/quantms/compare/1.6.0...1.7.0