Published March 17, 2026 | Version v1
Dataset Open

ECHO - human repeat catalogs

Authors/Creators

  • 1. ROR icon Maastricht University Medical Centre
  • 2. EDMO icon University of Copenhagen

Contributors

  • 1. ROR icon University of Copenhagen
  • 2. ROR icon Maastricht University Medical Centre
  • 3. ROR icon Maastricht University

Description

This repository contains the repeat catalogs that can be used for our computational pipeline, ECHO, for comprehensive human repeatome profiling using ONT data. The catalogs are compiled from published resources (see manifest.yaml for sources) and adapted to ensure compatibility with tools in the pipeline. They define the genomic loci where genotyping and/or methylation profiling is performed. 

For more information, please have a look at the ECHO GitHub page.

Files

echoDB_v1.zip

Files (331.8 MB)

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Additional details

Software

Repository URL
https://github.com/leenput/ECHO-pipeline
Development Status
Active