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Published January 1, 2026 | Version 0.5.1
Software Open

github.com/aofarrel/tree_nine/matUtils_summarize

Authors/Creators

  • 1. University of California Santa Cruz

Description

Summarize

This workflows uses matUtils summarize to get pretty much all data you'd ever need from an UShER-formatted protobuff (.pb) phylogenetic tree.

Outputs include:

  • Basic summary
  • Aberrant (-A)
  • Clades (-A) and sample clades (-C)
  • Haplotypes (-H)
  • Mutations (-A)
  • Samples (-A)
  • Roho score (-R)

Files

github.com-aofarrel-tree_nine-matUtils_summarize_0.5.1.zip

Files (9.4 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.18112416 (URL)
https://dockstore.org/workflows/github.com/aofarrel/tree_nine/matUtils_summarize:0.5.1 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Faofarrel%2Ftree_nine%2FmatUtils_summarize/versions/0.5.1/PLAIN-WDL/descriptor/summarize.wdl (URL)