Published August 22, 2022
| Version v1
Dataset
Open
Table 2 in Reinstatement of Ticanto (Leguminosae - Caesalpinioideae) - the final piece in the Caesalpinia group puzzle
Authors/Creators
- 1. Accelerated Taxonomy Department, Royal Botanic Gardens, Kew, Richmond, Surrey, TW 9 3 AE, UK
- 2. Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China & University of Chinese Academy of Sciences, Beijing 100049, China & Ningbo Botanical Garden, Ningbo 315201, China
- 3. Royal Botanic Garden Edinburgh, 20 a Inverleith Row, Edinburgh EH 3 5 LR, UK & Technical University of Munich, Chair of Phytopathology, TUM School of Life Sciences, Emil-Ramman-St. 2, D- 85354, Freising, Germany
Description
Table 2. Primer pairs used for standard and nested PCR.
| Forward | Reverse | Reference | ||
|---|---|---|---|---|
| ITS | AB101 | AB102 | Douzery et al. 1999 | |
| ITS nested | ITS2 | ITS3 | White et al. 1990 | |
| rps16 | rpsF | rpsR2 | Oxelman et al. 1997 | |
| trnD-T | trnD | trnT | Shaw et al. 2005 ex Demesure et al. 1995 | |
| trnD-T nested | trnD | trnE | Shaw et al. 2005 | |
| trnD-T nested | trnY | trnT | Shaw et al. 2005 | |
| matK-trnK | nested | trnK685F | matKC6- Caesalpinia | Wojciechowski et al. 2004; Gagnon et al. 2016 |
| nested | trnK4La | trnK2R | Wojciechowski et al. 2004 | |
| trnL-F | trnL | trnF | Taberlet et al. 1991 | |
| trnL-F nested | trnLc | trnLd | Taberlet et al. 1991 | |
| trnL-F nested | trnLe | trnLf | Taberlet et al. 1991 | |
Notes
Published as part of Clark, Ruth P., Jiang, Kai-Wen & Gagnon, Edeline, 2022, Reinstatement of Ticanto (Leguminosae - Caesalpinioideae) - the final piece in the Caesalpinia group puzzle, pp. 59 in PhytoKeys 205 on page 59, DOI: 10.3897/phytokeys.205.82300
Files
Files
(3.2 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:4e58fc710575fe748a6199f1b18af8c9
|
3.2 kB | Download |
System files
(16.7 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:558b974011ed5e03b1480d91ca3013e1
|
16.7 kB | Download |
Additional details
Identifiers
References
- Douzery, EJP, Pridgeon, AM, Kores, P, Linder, HP, Kurzweil, H, Chase, MW, 1999. Molecular phylogenetics of Diseae (Orchidaceae): A contribution from nuclear ribosomal ITS sequences. American Journal of Botany 86 (6): 887 - 899, DOI: https://doi.org/10.2307/2656709
- White, TJ, Bruns, T, Lee, S, Taylor, J, 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics in PCR protocols - a guide to methods and applications. Academic Press. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Oxelman, B, Liden, M, Berglund, D, 1997. Chloroplast rpsl6 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systematics and Evolution 206: 393 - 410, DOI: https://doi.org/10.1007/BF00987959
- Shaw, J, Lickey, EB, Beck, JT, Farmer, SB, Liu, W, Miller, J, Siripun, KC, Winder, CT, Schilling, EE, Small, RL, 2005. The Tortoise And The Hare Ii: Relative Utility Of 21 Noncoding Chloroplast Dna Sequences For Phylogenetic Analysis. American Journal of Botany 92 (1): 142 - 166, DOI: https://doi.org/10.3732/ajb.92.1.142
- Demesure, B, Sodzi, N, Petit, RJ, 1995. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Molecular Ecology 4 (1): 129 - 134, DOI: https://doi.org/10.1111/j.1365-294X.1995.tb00201.x
- Wojciechowski, MF, Lavin, M, Sanderson, MJ, 2004. A Phylogeny Of Legumes (Leguminosae) Based On Analysis Of The Plastid Matk Gene Resolves Many Well-Supported Subclades Within The Family. American Journal of Botany 91 (11): 1846 - 1862, DOI: https://doi.org/10.3732/ajb.91.11.1846
- Gagnon, E, Bruneau, A, Hughes, CE, de Queiroz, LP, Lewis, GP, 2016. A new generic system for the pantropical Caesalpinia group (Leguminosae). PhytoKeys 71: 1 - 160, DOI: https://doi.org/10.3897/phytokeys.71.9203
- Taberlet, P, Gielly, L, Pautou, G, Bouvet, J, 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17 (5): 1105 - 1109, DOI: https://doi.org/10.1007/BF00037152