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Table 1 in Morpho-molecular characterisation of Arecophila, with A. australis and A. clypeata sp. nov. and A. miscanthi comb. nov.
Authors/Creators
- 1. The Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China, Guizhou University, Guizhou, China & The High Efficacy Application of Natural Medicinal Resources Engineering Center of Guizhou Province (The Key Laboratory of Optimal Utilization of Natural Medicine Resources), School of Pharmaceutical Sciences, Guizhou Medical University, University Town, Guian New District, Guizhou, China
- 2. The High Efficacy Application of Natural Medicinal Resources Engineering Center of Guizhou Province (The Key Laboratory of Optimal Utilization of Natural Medicine Resources), School of Pharmaceutical Sciences, Guizhou Medical University, University Town, Guian New District, Guizhou, China
- 3. Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand
- 4. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- 5. Shanghai Key Laboratory of Molecular Medical Mycology, Department of Dermatology and Venereology, Changzheng Hospital, Shanghai, China
- 6. Department of Microbiology, Guizhou Medical University, University Town, Guian New District, Guizhou, China
- 7. The Engineering and Research Center for Southwest Bio-Pharmaceutical Resources of National Education Ministry of China, Guizhou University, Guizhou, China
Description
Table 1. Sequences used for phylogenetic analyses in this study.
| Species | Strain number | Status | GenBank accession numbers | References | |||
|---|---|---|---|---|---|---|---|
| ITS | LSU | rpb2 | β-tubulin | ||||
| Achaetomium macrosporum | CBS 532.94 | - | KX976574 | KX976699 | KX976797 | KX976915 | Wang et al. (2016) |
| Amphibambusa bambusicola | MFLUCC 11-0617 | HT | KP744433 | KP744474 | N/A | N/A | Senanayake et al. (2015) |
| Amphisphaeria acericola | MFLU 16-2479 | HT | NR_171945 | MK640424 | N/A | N/A | Senanayake et al. (2019, submitted directly) |
| Amphisphaeria thailandica | MFLU 18-0794 | HT | NR_168783 | NG_068588 | MK033640 | MK033639 | Samarakoon et al. (2019) |
| Amphisphaeria umbrina | AFTOL-ID 1229 | AF009805 | N/A | FJ176863 | FJ238348 | N/A | Schoch (2008, submitted directly) |
| Apiospora bambusae | ICMP 6889 | - | N/A | DQ368630 | DQ368649 | N/A | Tang et al. (2007) |
| Apiospora hyphopodii | MFLUCC 15-0003 | HT | KR069110 | KY356093 | N/A | N/A | Dai et al. (2016) |
| Apiospora setosa | ICMP 4207 | - | N/A | DQ368631 | DQ368650 | DQ368620 | Tang et al. (2007) |
| Apiospora yunnana | MFLUCC 15-0002 | HT | KU940147 | NG_057104 | KU940177 | MK291950 | Dai et al. (2017) |
| Arecophila australis | GZUCC0112 | HT | MT742126 | MT742133 | N/A | MT741734 | This study |
| Arecophila australis | GZUCC0124 | - | MT742125 | MT742132 | N/A | N/A | This study |
| Arecophila bambusae | HKUCC 4794 | - | N/A | AF452038 | N/A | N/A | Kang et al. (1999) |
| Arecophila clypeata | GZUCC0110 | HT | MT742129 | MT742136 | MT741732 | N/A | This study |
| Arecophila clypeata | GZUCC0127 | - | MT742128 | MT742135 | N/A | N/A | This study |
| Arecophila miscanthi | GZUCC0122 | - | MT742127 | MT742134 | N/A | N/A | This study |
| Arecophila miscanthi | MFLU 19-2333 | HT | NR_171235 | MK503827 | N/A | N/A | Hyde et al. (2020) |
| Arecophila sp. | HKUCC 6487 | - | N/A | AF452039 | N/A | N/A | Jeewon et al. (2003) |
| Apiospora yunnana | MFLUCC 15-0002 | HT | KU940147 | NG_057104 | KU940177 | MK291950 | Dai et al. (2017) |
| Atrotorquata spartii | MFLUCC 13-0444 | HT | N/A | KP325443 | N/A | N/A | Thambugala et al. (2015) |
| Bagadiella lunata | CBS 124762 | HT | NR_132832 | NG_058637 | N/A | N/A | Cheewangkoon et al. (2009) |
| Barrmaelia rappazii | Cr2 = CBS 142771 | HT | MF488989 | MF488989 | MF488998 | MF489017 | Voglmayr et al. (2018) |
| Barrmaelia rhamnicola | BR = CBS 142772 | HT | MF488990 | MF488990 | MF488999 | MF489018 | Voglmayr et al. (2018) |
| Bartalinia pondoensis | CMW 31067 | - | MH863602 | MH875078 | MH554904 | MH554663 | Vu et al. (2019) |
| Beltrania pseudorhombica | CBS 138003 | HT | MH554124 | NG_058667 | MH555032 | N/A | Liu et al. (2019) |
| Beltrania rhombica | CBS 123.58 | T | MH857718 | MH868082 | MH554899 | MH704631 | Vu et al. (2019) |
| Beltraniopsis longiconidiophora | MFLUCC 17-2139 | HT | NR_158353 | NG_066200 | N/A | N/A | Liu et al. (2017) |
| Biscogniauxia nummularia | MUCL 51395 | ET | KY610382 | KT281894 | KY624236 | KX271241 | Senanayake et al. (2015) |
| Cainia anthoxanthis | MFLUCC 15-0539 | HT | NR_138407 | KR092777 | N/A | N/A | Senanayake et al. (2015) |
| Cainia graminis | CBS 136.62 | - | MH858123 | AF431949 | N/A | N/A | Vu et al. (2019) |
| Cainia graminis | MFLUCC 15-0540 | - | KR092793 | KR092781 | N/A | N/A | Senanayake et al. (2015) |
| Camillea obularia | ATCC 28093 | - | KY610384 | KY610429 | KY624238 | KX271243 | Wendt et al. (2018) |
| Castanediella acaciae | CBS 139896 | HT | NR_137985 | NG_067293 | N/A | N/A | Crous et al. (2015) |
| Castanediella couratarii | CBS 579.71 | HT | NR_145250 | NG_066249 | N/A | N/A | Vu et al. (2019) |
| Castanediella eucalypticola | CPC 26539 | HT | KX228266 | KX228317 | N/A | KX228382 | Crous et al. (2013) |
| Chaetomium elatum | CBS 374.66 | - | KC109758 | KC109758 | KF001820 | KC109776 | Wang et al. (2016) |
| Ciferriascosea fluctuatimura | MFLUCC 15-0541 | HT | KR092789 | KR092778 | N/A | N/A | Senanayake et al. (2015) |
| Ciferriascosea rectimura | MFLUCC 15-0542 | HT | NR_153905 | KR092776 | N/A | N/A | Senanayake et al. (2015) |
| Clypeophysalospora latitans | CBS 141463 | ET | NR_153929 | NG_058958 | N/A | N/A | Giraldo et al. (2017) |
| Coniocessia maxima | CBS 593.74 | HT | NR_137751 | MH878275 | N/A | N/A | Vu et al. (2019) |
| Coniocessia nodulisporioides | CBS 281.77 | IT | MH861061 | AJ875224 | N/A | N/A | García et al. (2006) |
| Creosphaeria sassafras | STMA 14087 | - | KY610411 | KY610468 | KY624265 | KX271258 | Wendt et al. (2018) |
| Cylindrium aeruginosum | CBS 693.83 | - | KM231854 | KM231734 | KM232430 | KM232124 | Lombard et al (2014, submitted directly) |
| Cylindrium grande | CBS 145655 | HT | NR_165557 | NG_068656 | MK876481 | MK876502 | Crous et al. (2019) |
| Cylindrium purgamentum | CPC 29580 | HT | NR_155691 | NG_067320 | N/A | N/A | Koppel et al. (2017) |
| Daldinia concentrica | CBS 113277 | - | AY616683 | KT281895 | KY624243 | KC977274 | Senanayake et al. (2015) |
| Delonicicola siamense | MFLUCC 15-0670 | HT | MF167586 | NG_059172 | MF158346 | N/A | Perera et al. (2017) |
| Diatrype palmicola | MFLUCC 11-0018 | - | KP744439 | KP744481 | N/A | N/A | Liu et al. (2015) |
| Diatrype whitmanensis | ATCC MYA-4417 | - | FJ746656 | FJ430587 | N/A | N/A | Igo et al. (2009, direct submission) |
| Entosordaria perfidiosa | EPE = CBS 142773 | ET | MF488993 | MF488993 | MF489003 | MF489021 | Voglmayr et al. (2018) |
| Entosordaria quercina | RQ = CBS 142774 | HT | MF488994 | MF488994 | MF489004 | MF489022 | Voglmayr et al. (2018) |
| Eutypa flavovirens | MFLUCC 13-0625 | - | KR092798 | KR092774 | N/A | N/A | Senanayake et al. (2015) |
| Eutypa laevata | CBS 291.87 | - | HM164737 | N/A | HM164805 | HM164771 | Trouillas and Gubler (2010) |
| Eutypa lata | CBS 208.87 | NT | MH862066 | MH873755 | KF453595 | DQ006969 | Vu et al. (2019) |
| Furfurella nigrescens | CBS 143622 | HT | MK527844 | MK527844 | MK523275 | MK523332 | Voglmayr et al. (2019) |
| Furfurella stromatica | CBS 144409 | HT | NR_164062 | MK527846 | MK523277 | MK523334 | Voglmayr et al. (2019) |
| Graphostroma platystomum | AFTOL-ID 1249 | HT | HG934115 | DQ836906 | DQ836893 | HG934108 | Zhang et al. (2006) |
| Hyponectria buxi | UME 31430 | - | - | AY083834 | N/A | N/A | Smith et al. (2002, submitted directly) |
| Hypoxylon fragiforme | MUCL51264 | ET | KM186294 | KM186295 | KM186296 | KM186293 | Daranagama et al. (2015) |
| Iodosphaeria honghensis | MFLU 19-0719 | HT | MK737501 | MK722172 | MK791287 | N/A | Marasinghe et al. (2019) |
| Iodosphaeria tongrenensis | MFLU 15-0393 | HT | KR095282 | KR095283 | N/A | N/A | Li et al. (2015) |
| Jackrogersella multiformis | CBS 119016 | ET | KC477234 | KT281893 | KY624290 | KX271262 | Wendt et al. (2018) |
| Kretzschmaria deusta | CBS 163.93 | - | KC477237 | KT281896 | KY624227 | KX271251 | Senanayake et al. (2015) |
| Lepteutypa fuckelii | CBS 140409 | NT | NR_154123 | KT949902 | MK523280 | MK523337 | Jaklitsch et al. (2016) |
| Leptosillia pistaciae | CBS 128196 | HT | NR_160064 | MH798901 | MH791334 | MH791335 | Voglmayr et al. (2019) |
| Leptosillia wienkampii | CBS 143630 | ET | NR_164067 | MK527865 | MK523297 | MK523353 | Voglmayr et al. (2019) |
| Longiappendispora chromolaenae | MFLUCC 17-1485 | HT | NR_169723 | NG_068714 | N/A | N/A | Mapook et al. (2020) |
| Lopadostoma americanum | LG8 | HT | KC774568 | KC774568 | KC774525 | N/A | Jaklitsch et al. (2014) |
| Lopadostoma dryophilum | LG21 | ET | KC774570 | KC774570 | KC774526 | MF489023 | Jaklitsch et al. (2014) |
| Lopadostoma fagi | LF1 | HT | KC774575 | KC774575 | KC774531 | N/A | Jaklitsch et al. (2014) |
| Lopadostoma quercicola | LG27 | HT | KC774610 | KC774610 | KC774558 | N/A | Jaklitsch et al. (2014) |
| Lopadostoma turgidum | LT2 | ET | KC774618 | KC774618 | KC774563 | MF489024 | Jaklitsch et al. (2014) |
| Melogramma campylosporum | MBU | - | JF440978 | JF440978 | N/A | N/A | Jaklitsch and Voglmayr (2012) |
| Neophysalospora eucalypti | CBS 111123 | - | KP031107 | KP031109 | N/A | N/A | Crous et al. (2014) |
| Neophysalospora eucalypti | CBS 138864 | HT | KP004462 | MH878627 | N/A | N/A | Crous et al. (2014) |
| Oxydothis metroxylicola | MFLUCC 15-0281 | HT | KY206774 | KY206763 | KY206781 | N/A | Konta et al. (2016) |
| Oxydothis palmicola | MFLUCC 15-0806 | HT | KY206776 | KY206765 | KY206782 | N/A | Konta et al. (2016) |
| Oxydothis phoenicis | MFLUCC 18-0269 | HT | MK088065 | MK088061 | N/A | N/A | Hyde et al. (2020) |
| Phlogicylindrium uniforme | CBS 131312 | HT | JQ044426 | JQ044445 | MH554910 | MH704634 | Crous et al. (2011) |
| Podosordaria tulasnei | CBS 128.80 | - | KT281902 | KT281897 | N/A | N/A | Senanayake et al. (2015) |
| Poronia punctata | CBS 656.78 | HT | KT281904 | KY610496 | KY624278 | KX271281 | Wendt et al. (2018) |
| Pseudomassaria chondrospora | MFLUCC 15-0545 | - | KR092790 | KR092779 | N/A | N/A | Senanayake et al. (2015) |
| Pseudomassaria sepincoliformis | CBS 129022 | - | JF440984 | JF440984 | N/A | N/A | Jaklitsch and Voglmayr (2012) |
| Pseudosporidesmium knawiae | CBS 123529 | HT | MH863299 | MH874823 | N/A | N/A | Crous et al. (2017, submitted directly) |
| Pseudosporidesmium lambertiae | CBS 143169 | HT | NR_156656 | NG_058506 | N/A | N/A | Crous et al. (2017) |
| Pseudotruncatella arezzoensis | MFLUCC 14-0988 | HT | NR_157489 | NG_070426 | N/A | N/A | Perera et al. (2018) |
| Pseudotruncatella bolusanthi | CBS 145532 | HT | NR_165575 | MK876448 | N/A | N/A | Crous et al. (2019) |
| Robillarda roystoneae | CBS 115445 | HT | NR_145251 | NG_069287 | MH554880 | KR873317 | Liu et al. (2019) |
| Sarcoxylon compunctum | CBS 359.61 | - | MH858083 | KY610462 | KY624230 | KX271255 | Wendt et al.(2018) |
| Seiridium marginatum | CBS 140403 | ET | NR_156602 | MH554223 | LT853149 | MT853249 | Liu et al. (2019) |
| Seynesia erumpens | SMH 1291 | - | N/A | AF279410 | AY641073 | N/A | Bhattacharya et al. (2000) |
| Sordaria fimicola | CBS 723.96 | - | MH862606 | MH874231 | DQ368647 | DQ368618 | Vu et al. (2019) |
| Sporocadus rotundatus | CBS 616.83 | HT | NR_161091 | NG_069584 | MH554974 | MH554737 | Liu et al. (2019) |
| Subsessila turbinata | MFLUCC 15-0831 | HT | NR_148122 | NG_059724 | N/A | N/A | Lin et al. (2017) |
| Vialaea insculpta | DAOM 240257 | - | JX139726 | JX139726 | N/A | N/A | Hambleton et al. (2010, submitted directly) |
| Vialaea mangiferae | MFLUCC 12-0808 | HT | NR_171903 | NG_073594 | N/A | N/A | Senanayake et al. (2021, submitted directly) |
| Vialaea minutella | BRIP 56959 | - | KC181926 | KC181924 | N/A | N/A | McTaggart et al. (2013) |
| Xyladictyochaeta lusitanica | CBS 143502 | - | MH107926 | MH107972 | N/A | MH108053 | Crous et al. (2013) |
| Xylaria hypoxylon | CBS 122620 | ET | KY610407 | KY610495 | KY624231 | KX271279 | Wendt et al. (2018) |
| Xylaria obovata | MFLUCC 13-0115 | - | KR049088 | KR049089 | N/A | N/A | Wendt et al. (2018) |
| Xylaria polymorpha | MUCL 49884 | - | KY610408 | KT281899 | KY624288 | KX271280 | Wendt et al. (2018) |
Note. Type specimens are labelled with HT (holotype), ET (epitype) and IT (isotype), T (Type). N/A: not available.
Notes
Published as part of Li, Qi Rui, Zhang, Xu, Lin, Yan, Samarakoon, Milan C., Hyde, Kevin David, Shen, Xiang Chun, Liao, Wan Qing, Karunarathna, Anuruddha, Long, Si Han, Kang, Ying Qian & Kang, Ji Chuan, 2022, Morpho-molecular characterisation of Arecophila, with A. australis and A. clypeata sp. nov. and A. miscanthi comb. nov., pp. 123 in MycoKeys 88 on page 123, DOI: 10.3897/mycokeys.88.79475
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References
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