System of Pathology Agents for Research and Knowledge (SPARK): code, parameters and reference books for parameters

This repositorium contains accompanying information to SPARK pipeline:

"System of Pathology Agents for Research and Knowledge (SPARK): Autonomous Scientific Discovery in Pathology"

1. SPARK-main.zip

Full code of SPARK pipeline and accompanying WSI processing pipelines. 

2. SPARK_parameter_html_books.zip

Detailed reference books to all SPARK parameters with easy navigation and search function.

3. SPARK_database_refined_ideas_all_use_cases.zip

Database of refined SPARK ideas (input for coding pipeline),

4. SPARK_parameter_python_functions.zip

Separate archive of coded SPARK parameters as Python functions (also part of SPARK-main.zip)

5. SPARK_human_pathologists_idea_database.zip

Database of refined human pathologists' ideas (input for coding pipeline),

6. SPARK_human_pathologists_python_functions.zip

Separate archive of coded parameters (human pathologists' ideas) as Python functions.

For more details, please refer to original publication and the GitHub repository:

https://github.com/cpath-ukk/SPARK

For using SPARK pipeline and any of its components and coded parameters, the original publication must be cited:

"System of Pathology Agents for Research and Knowledge (SPARK): Autonomous Scientific Discovery in Pathology"

[Journal, Year]

[Paper DOI]