klamt-lab/COBRA-k: COBRA-k 0.0.8

This Christmas release contains many bug fixes in model instantiation, spreadsheets, SBML loading and saving of references, model parameter filling and more, as well as many new functionalities (many of which will be further documented once practice shows that these new features work reliably :-):

• Metabolite instances now also have a specific compartment member variable
• Given a MetaNetX-compatible ID, you can now also, after downloading the specific MetaNetX files, determine a SMILES formula string for each metabolite - check out the new metanetx_functionality
• AlphaFold protein PDB files (useful for neural networks that try to predict enzyme parameters) can now also be automatically downloaded - check out the new alphafold_db_functionality
• Given Uniprot-compatible IDs, you can now automatically download protein sequences for your enzymes from UniProt - check out the changes in uniprot_functionality

Full Changelog: https://github.com/klamt-lab/COBRA-k/compare/v0.0.7...v0.0.8