Published December 21, 2025 | Version v1.0.6
Software Open

autoflatten: automatically create cortical flatmaps from FreeSurfer surfaces

  • 1. Department of Neuroscience, University of California, Berkeley

Description

Python pipeline for automatically creating flattened versions of FreeSurfer cortical surfaces. Features JAX-accelerated optimization with vectorized gradient descent, template-based cut mapping via FreeSurfer's surface registration, and FreeSurfer-compatible patch file output.

Files

gallantlab/autoflatten-v1.0.6.zip

Files (1.4 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/gallantlab/autoflatten (URL)