Microbotryozyma lacustris sp. nov. (Basidiomycota, Ustilentylomataceae) and Cyberlindnera basumtsoensis sp. nov. (Ascomycota, Phaffomycetaceae), two novel yeasts isolated from freshwater Lake Basom Tso, China
Authors/Creators
- 1. Tibet Plateau Institute of Biology, Lhasa, China
Description
High-altitude lakes in Tibet represent unique and underexplored reservoirs of microbial diversity. An investigation of yeast diversity in Basom Lake, a high-altitude lake in Tibet, China, led to the discovery of two novel species: Microbotryozyma lacustris sp. nov. and Cyberlindnera basumtsoensis sp. nov. Phylogenetic analyses of the ITS region and D1/D2 LSU rRNA gene sequences, complemented by phenotypic characterization, confirmed their distinct taxonomic status. Microbotryozyma lacustris represents the third species described in its genus and the first documented occurrence of Microbotryozyma in a freshwater habitat. Cyberlindnera basumtsoensis further expands the ecological diversity of the genus Cyberlindnera. This study significantly enriches the taxonomic framework of both genera and underscores the value of high-altitude lakes as reservoirs of novel yeast diversity.
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References
- Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Research 25(17): 3389–3402. https://doi.org/10.1093/nar/25.17.3389
- Barros KO, Souza RM, Palladino F, Cadete RM, Santos ARO, Goes-Neto A, Berkov A, Zilli JE, Vital MJS, Lachance MA, Rosa CA (2021) Cyberlindnera dasilvae sp. nov., a xylitol-producing yeast species isolated from rotting wood and frass of cerambycid larva. International Journal of Systematic and Evolutionary Microbiology 71(9). https://doi.org/10.1099/ijsem.0.004986
- Bonthong P, Bunterngsook B, Mhuantong W, Aiewviriyasakul K, Sritusnee W, Champreda V, Lekakarn H (2025) Genomic and functional analysis of a novel yeast Cyberlindnera fabianii TBRC 4498 for high-yield xylitol production. Journal of Fungi (Basel, Switzerland) 11(6): 453. https://doi.org/10.3390/jof11060453
- Chai C, Zhu L, Liu J, Han X, Nutaratat P, Khuuamwong P, Hui F (2023) Spencerozyma pingqiaoensis sp. nov., a yeast species isolated from the external surface of rice leaves in China. International Journal of Systematic and Evolutionary Microbiology 73(4). https://doi.org/10.1099/ijsem.0.005820
- Fang MY, Dong F, He JQ (2018) Study on resources of macrofungi in Basomtso National Forest Park. Zhongguo Shiyongjun 37(2): 7–10. https://doi.org/10.13629/j.cnki.53-1054.2018.02.002
- Han L, Li ZY, Guo XF, Tan JL, He SZ, Cui XL, Li SL (2017) Hannaella dianchiensis sp. nov., a basidiomycetous yeast species isolated from lake water. International Journal of Systematic and Evolutionary Microbiology 67(6): 2014–2018. https://doi.org/10.1099/ijsem.0.001908
- Hao Z, Wang YH, Zheng YY, Guo XF, Ji D (2021) Diversity of culturable yeasts in Yamzhog Yumco Lake. Acta Microbiologica Sinica 61(5): 1269–1286. https://doi.org/10.13343/j.cnki.wsxb.20200369
- Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Molecular Biology and Evolution 33(7): 1870–1874. https://doi.org/10.1093/molbev/msw054
- Kurtzman CP (2000) Three new ascomycetous yeasts from insect-associated arboreal habitats. Canadian Journal of Microbiology 46: 50–58. https://doi.org/10.1139/w99-115
- Kurtzman CP, Robnett CJ (1998) Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73(4): 331–371. https://doi.org/10.1023/A:1001761008817
- Kurtzman CP, Robnett CJ, Basehoar-Powers E (2008a) Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. FEMS Yeast Research 8(6): 939–954. https://doi.org/10.1111/j.1567-1364.2008.00419.x
- Kurtzman CP, Fell JW, Boekhout T, Robert V (2011) Methods for isolation, phenotypic characterization and maintenance of yeasts. In: Kurtzman CP, Fell JW, Boekhout T (Eds) The Yeasts, a Taxonomic Study, 5th Edn. , Elsevier Science, Amsterdam, 87–110. https://doi.org/10.1016/B978-0-444-52149-1.00007-0
- Kurtzman CP, Robnett CJ, Basehoar-Powers (2008b) In: Kurtzman CP, Fell JW, Boekhout T (Eds) The Yeasts, a Taxonomic Study, 5th Edn. , Vol. 2. Elsevier, San Diego, 521–543. https://doi.org/10.1016/B978-0-444-52149-1.00042-2
- Lachance MA, Boekhout T, Scorzetti G, Fell JW, Kurtzman CP (2011) In: Kurtzman CP, Fell JW, Boekhout T (Eds) The Yeasts, a Taxonomic Study, 5th Edn. , Vol. 2. Elsevier, San Diego, 987–1278. https://doi.org/10.1016/B978-0-444-52149-1.00090-2
- Li AH, Yuan FX, Groenewald M, Bensch K, Yurkov AM, Li K, Han PJ, Guo LD, Aime MC, Sampaio JP, Jindamorakot S, Turchetti B, Inacio J, Wang QM, Bai FY (2020b) Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species. Studies in Mycology 96: 17–140. https://doi.org/10.1016/j.simyco.2020.01.002
- Li QQ, Chen HL, Luo Z, Renzeng L, Huang X (2020a) Characterization of humic and fulvic acid in the surface sediments from Basong Lake in Tibet. China. Environmental Sciences (Ruse) 40(9): 4039–4047. https://doi.org/10.19674/j.cnki.issn1000-6923.2020.0449
- Luo Z, Renzeng L, Chen HL, Huang X (2021) Hydrochemical characteristics and its controlling factors of Basong Lake during the cold season in Tibet. China. Environmental Sciences (Ruse) 41(9): 4263–4270. https://doi.org/10.19674/j.cnki.issn1000-6923.20210618.007
- Rannala B, Yang Z (1996) Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference. Journal of Molecular Evolution 43(3): 304–311. https://doi.org/10.1007/BF02338839
- Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England) 19(12): 1572–1574. https://doi.org/10.1093/bioinformatics/btg180
- Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109(16): 6241–6246. https://doi.org/10.1073/pnas.1117018109
- Soto-Robles LV, Torres-Banda V, Rivera-Orduña FN, Curiel-Quesada E, Hidalgo-Lara ME, Zúñiga G (2019) An overview of genes from Cyberlindnera americana, a symbiont yeast isolated from the gut of the bark beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae), involved in the detoxification process using genome and transcriptome data. Frontiers in Microbiology 10: 2180. https://doi.org/10.3389/fmicb.2019.02180
- Sousa-Silva M, Vieira D, Soares P, Casal M, Soares-Silva I (2021) Expanding the knowledge on the skillful yeast Cyberlindnera jadinii. Journal of Fungi (Basel, Switzerland) 7(1): 36. https://doi.org/10.3390/jof7010036
- Suh SO, Maslov DA, Molestina RE, Zhou JJ (2012) Microbotryozyma collariae gen. nov., sp. nov., a basidiomycetous yeast isolated from a plant bug Collaria oleosa (Miridae). Antonie van Leeuwenhoek 102(1): 99–104. https://doi.org/10.1007/s10482-012-9717-z
- Tsuji M, Tanabe Y, Vincent WF, Uchida M (2018) Gelidatrema psychrophila sp. nov., a novel yeast species isolated from an ice island in the Canadian High Arctic. Mycoscience 59(1): 67–70. https://doi.org/10.1016/j.myc.2017.08.010
- Urano N, Shirao A, Naito Y, Okai M, Ishida M, Takashio M (2019) Molecular phylogeny and phenotypic characterization of yeasts with a broad range of pH tolerance isolated from natural aquatic environments. Advances in Microbiology 9: 56–73. https://doi.org/10.4236/aim.2019.91005
- Wang SM, Dou HS (1998) Lake in China. Science Press, Beijing, 472–473. https://doi.org/10.1007/SpringerReference_30437
- Wang QM, Begerow D, Groenewald M, Liu XZ, Theelen B, Bai FY, Boekhout T (2015a) Multigene phylogeny and taxonomic revision of yeasts and related fungi in the Ustilaginomycotina. Studies in Mycology 81: 55–83. https://doi.org/10.1016/j.simyco.2015.10.004
- Wang QM, Groenewald M, Takashima M, Theelen B, Han PJ, Liu XZ, Boekhout T, Bai FY (2015b) Phylogeny of yeasts and related filamentous fungi within Pucciniomycotina determined from multigene sequence analyses. Studies in Mycology 81: 27–53. https://doi.org/10.1016/j.simyco.2015.08.002
- Wei YH, Zhu HY, Wen Z, Guo LC, Bai M, Wang DQ, Huang W, Jiang LL, Kajadpai N, Srisuk N, Han PJ, Bai FY (2024) Starmerella fangiana f.a. sp. nov., a new ascomycetous yeast species from Daqu-making environment and other sources. International Journal of Systematic and Evolutionary Microbiology 74(11): 006581. https://doi.org/10.1099/ijsem.0.006581
- White TJ (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (Eds) PCR Protocols: A guide for methods and applications. Academic Press, New York, 315–322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
- Wurzbacher CM, Bärlocher F, Grossart HP (2010) Fungi in lake ecosystems. Aquatic Microbial Ecology 59(2): 125–149. https://doi.org/10.3354/ame01385
- Yang XL, Pan YZ, Ba S (2022) Seasonal and vertical distribution of protozoa community structure in Basom-tso Lake. Acta Ecologica Sinica 42(8): 3216–3227. https://doi.org/10.5846/stxb202101050044
- Zhou Y, Jia BS, Han PJ, Wang QM, Li AH, Zhou YG (2019) Wickerhamomyces kurtzmanii sp. nov., an ascomycetous yeast isolated from crater lake water, Da Hinggan Ling Mountain, China. Current Microbiology 76(12): 1537–1544. https://doi.org/10.1007/s00284-019-01773-x
- Zhou D, Wang DX, Ge S, Qin Z, Ou MX, Guo XF, De J (2025) Fungal diversity, community structure and rrediction of ecological function in Basomtso Lake, Tibet. Biotechnology Bulletin 41(1): 298–311. https://doi.org/10.13560/j.cnki.biotech.bull.1985.2024-0445