CAZyme and COG annotations of Paraglaciecola chathamensis genomes recovered from Porphyra spp. and surrounding seawater using Melange pipeline (https://github.com/sandragodinhosilva/melange)
Authors/Creators
-
Pereira, André C.
(Producer)1
- Cortez, Francisco (Researcher)1
- Chaves, Guilherme (Researcher)1
- Nanetti, Enrico (Researcher)2
- Leite, Ricardo C. (Researcher)3
- Mendes, Madalena Caria (Researcher)4
- Oliveira, Inês (Researcher)5
- Abreu, Helena (Researcher)6
- Martins, Margarida (Researcher)5
-
Keller-Costa, Tina
(Project leader)1
-
Costa, Rodrigo
(Project leader)1
- 1. Institute for Bioengineering and Biosciences (iBB)
- 2. Unit of Microbiome Science and Biotechnology, Department of Pharmacy and Biotechnology, University of Bologna
-
3.
Instituto Gulbenkian de Ciência
-
4.
GreenCoLab
-
5.
ALGAplus
-
6.
Bantry Marine Research Station
Description
We report thirteen metagenome-assembled genomes (MAGs) of Paraglaciecola chathamensis (Gammaproteobacteria) retrieved from Atlantic Nori (Porphyra spp.) in a seaweed farming system. MAGs encode proteins involved in host-microbe interactions, nutrient acquisition, nitrogen and cofactor metabolism, stress resilience, and genome plasticity, illuminating possible roles of Paraglaciecola in the Porphyra holobiont.
This information is part of the manucript:
Pereira AC, Cortez F, Chaves G, Nanetti E, Leite RC, Mendes MC, Oliveira I, Abreu H, Martins M, Keller-Costa T, Costa R. Metagenome-assembled genome sequences of Paraglaciecola chathamensis (Gammaproteobacteria) associated with farmed Atlantic Nori (Porphyra dioica and Porphyra umbilicalis). Microbiology Resource Announcements.
Files
Files
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Additional details
Software
- Repository URL
- https://github.com/sandragodinhosilva/melange