Published December 12, 2025
| Version v1
Dataset
Open
Files related to scMalignantFinder
Authors/Creators
Description
combine_training.h5ad: training data
test_TabulaSapiens.h5ad: test data of healthy organs
test_cancerCellLine.h5ad: test data of cancer cell lines
combined_tumor_up_down_degs.txt: feature list for pretrained model
ordered_feature.tsv: ordered feature list for pretrained model
model.joblib: pretrained model
sc_malignant_deg.gmt: genes upregulated or downregulated in malignant cells
Malignant_MPs.Gavish_2023.gmt: 67 cancer cell state gene sets
Files
combined_tumor_up_down_degs.txt
Files
(9.8 GB)
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md5:85a197254807a6cc7d9b2e7778a1fc57
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Additional details
Identifiers
Related works
- Is source of
- Dataset: 10.1038/s42003-025-07942-y (DOI)
Dates
- Available
-
2025-03-27
References
- Yu, Qiaoni, Yuan-Yuan Li, and Yunqin Chen. "scMalignantFinder distinguishes malignant cells in single-cell and spatial transcriptomics by leveraging cancer signatures." Communications Biology 8.1 (2025): 504.