There is a newer version of the record available.

Published December 10, 2025 | Version 2025-12-10--13-21-04Z
Software Open

nextstrain/nextclade_data: 2025-12-10--13-21-04Z

Authors/Creators

  • 1. @neherlab @nextstrain
  • 2. @nextstrain
  • 3. Biozentrum, University of Basel
  • 4. @nextstrain / @blab
  • 5. @SwissTPH @hodcroftlab
  • 6. Fred Hutchinson
  • 7. STPH
  • 8. @blab @nextstrain
  • 9. @nextstrain @blab
  • 10. NeherLab
  • 11. ETH Zurich @cevo-public @GenSpectrum

Description

This release contains changes for datasets:

  • Enterovirus D68 (enpen/enterovirus/ev-d68)

Enterovirus D68 (enpen/enterovirus/ev-d68)

  • Update alignment parameters in pathogen.json:
    • Fix gap extension penalty
    • Enable reverse-complement handling
  • Recompute tree topology (ML tree rerun)
  • Regenerate mutation labels for all clades
  • Update reference example sequences

Files

nextstrain/nextclade_data-2025-12-10--13-21-04Z.zip

Files (417.9 MB)

Additional details

Related works

Is supplement to
Software: https://github.com/nextstrain/nextclade_data/tree/2025-12-10--13-21-04Z (URL)

Software

Repository URL
https://github.com/nextstrain/nextclade_data