Published October 10, 2021
| Version 1
Dataset
Open
kraken2 database of marine animal genomes, for host decontamination
Authors/Creators
-
1.
National Institute of Allergy and Infectious Diseases
Description
kraken2 database of common marine animal hosts in marine metagenomic dataset. Used in Nephele pipelines for decontamination of metagenomic datasets from common marine animal host reads (database inclusive of human genome).
Content of assemblies:
- Homo sapiens (GRCh38.p13),
- Conus ventricosus (ASM1839881v1),
- Crassostrea virginica (C_virginica-3.0) ,
- Crassostrea gigas (cgigas_uk_roslin_v1),
- Mytilus galloprovincialis (MGAL_10),
- Octopus sinensis (ASM634580v1),
- Paraescarpia echinospica (HKBU_Pec_v1),
- Streblospio benedicti (ASM1909598v1),
- Hyalella azteca (Hazt_2.0.2),
- Amphibalanus amphitrite (NRLGWU_Aamphi_draft),
- Paramacrobiotus sp. TYO (Prichtersi_v1.0),
- Hypsibius dujardini (ASM157998v1),
- Lytechinus pictus (UCSD_Lpic_2.0),
- Strongylocentrotus purpuratus (Spur_5.0),
- Apostichopus parvimensis (Ppar_1.0),
- Hydra vulgaris (Hydra_105_v3),
- Hydra viridissima (ASM1470644v1),
- Pocillopora damicornis (ASM370409v1),
- Amphimedon queenslandica (assembly v1.0)
Files
Files
(19.0 GB)
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md5:071427473fde7bd2b4ffd5ce8c6fb9f6
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19.0 GB | Download |