Published May 28, 2026
| Version v0.4
Software
Open
github.com/iwc-workflows/host-contamination-removal-short-reads/main
Description
This workflow takes paired-end Illumina fastq(.gz) files and runs Bowtie to map the reads against a reference genome (human, by default) and keep only the reads that do not align. MultiQC is used to aggregate the mapping reports.
Files
github.com-iwc-workflows-host-contamination-removal-short-reads-main_v0.4.zip
Files
(5.2 kB)
| Name | Size | Download all |
|---|---|---|
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md5:b36d8c6168bafafb5bded55308901ec3
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5.2 kB | Preview Download |
Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.20432280 (URL)
- https://dockstore.org/workflows/github.com/iwc-workflows/host-contamination-removal-short-reads/main:v0.4 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhost-contamination-removal-short-reads%2Fmain/versions/v0.4/PLAIN-gxformat2/descriptor/host-or-contamination-removal-on-short-reads.ga (URL)